PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21223_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 388aa MW: 43926.3 Da PI: 4.7313

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21223_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	40.5	8.2e-13	10	120	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 Gf+F+P+d el+ yL++k++g++l++e i+e+d+y v +P +L k +k e+ +y F+k +k cra_locus_21223_iso_2_len_1390_ver_3 10 LGFKFKPNDIELL-IYLRQKANGEPLPCEGLIPEIDLYGVdDPGKLFKGIK-ENALVYVFTKLKKL------G 74 59*********.9*********999***997875553.34566999988664......4 PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nr+ Wk k+++++kg ++g kk++v+ ++ + + m+e++l cra_locus_21223_iso_2_len_1390_ver_3 75 NRT-----WKGVDGVKAIYDSKGCVIGEKKSFVLINKMK---MRIGYNMKEFSL 120 675.....************************94333...468888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-16	8	138	IPR003441	NAC domain
PROSITE profile	PS51005	13.691	8	138	IPR003441	NAC domain
Pfam	PF02365	1.7E-7	11	120	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MGNARYPAGL GFKFKPNDIE LLIYLRQKAN GEPLPCEGLI PEIDLYGVDD PGKLFKGIKE 60 NALVYVFTKL KKLGNRTWKG VDGVKAIYDS KGCVIGEKKS FVLINKMKMR IGYNMKEFSL 120 AKDSSRFCDY VLCQIKKKGY KPRSLKYGGN CPEEDLCYDS VSIPEIGLPH SEGYECNDDG 180 SKIVVGLGQS QQSWSSLVPP PPMLFGGFYS AQEFGYRGVD SSMNLNGIEE FHQNKGTEFS 240 LSVSDTMINS VAFNLSRESF SESQQQQQQQ DTSNLXADDT LWGLMGWGFF EPWVQELSQD 300 QEEQSKEFSV SQHMITQCQQ QFSDSKEGMS YKPLMSSKFF EPSTETYLHN GEDNSWWMKD 360 HKMVADFGEN FVGEERDEFG VLEMIKGL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MGNARYPAGL GFKFKPNDIE LLIYLRQKAN GEPLPCEGLI PEIDLYGVDD PGKLFKGIKE  60
NALVYVFTKL KKLGNRTWKG VDGVKAIYDS KGCVIGEKKS FVLINKMKMR IGYNMKEFSL  120
AKDSSRFCDY VLCQIKKKGY KPRSLKYGGN CPEEDLCYDS VSIPEIGLPH SEGYECNDDG  180
SKIVVGLGQS QQSWSSLVPP PPMLFGGFYS AQEFGYRGVD SSMNLNGIEE FHQNKGTEFS  240
LSVSDTMINS VAFNLSRESF SESQQQQQQQ DTSNLXADDT LWGLMGWGFF EPWVQELSQD  300
QEEQSKEFSV SQHMITQCQQ QFSDSKEGMS YKPLMSSKFF EPSTETYLHN GEDNSWWMKD  360
HKMVADFGEN FVGEERDEFG VLEMIKGL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13708	3	11