PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2128_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 377aa    MW: 41817.7 Da    PI: 5.3351
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2128_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.51.5e-5491361128
                                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgk 72 
                                          l+pGfrFhPtdeelv +yL++k+ +k++++ ++i+e+diyk+ePwdLp  +k+k+++ ewyfFs  dkky +g+
  cra_locus_2128_iso_1_len_2016_ver_3   9 LAPGFRFHPTDEELVRYYLRRKICSKPFRF-DAISEIDIYKAEPWDLPgmSKLKTRDLEWYFFSVLDKKYGNGS 81 
                                          579**************************9.99***************6337778888**************** PP

                                  NAM  73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                          r+nrat++gyWk+tgkd++v++ k+++vg+kktLv+++grapkg++t+Wvmheyrl
  cra_locus_2128_iso_1_len_2016_ver_3  82 RTNRATDRGYWKTTGKDRPVYH-KSQVVGMKKTLVYHSGRAPKGQRTNWVMHEYRL 136
                                          **********************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-643159IPR003441NAC domain
PROSITE profilePS5100558.9919159IPR003441NAC domain
PfamPF023658.5E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MISKGSSSLA PGFRFHPTDE ELVRYYLRRK ICSKPFRFDA ISEIDIYKAE PWDLPGMSKL  60
KTRDLEWYFF SVLDKKYGNG SRTNRATDRG YWKTTGKDRP VYHKSQVVGM KKTLVYHSGR  120
APKGQRTNWV MHEYRLIDEE LGKAGISQDA FVLCRVFQKS GSGPKNGEQY GAPFVEEEWE  180
EDELEILPKD EAADEVEVGD DAYLDGDDLK QILAADIKQN NISGESSAAE KDVEEGIETG  240
MPSKQLEHDN DATSSKEASS KFGSGYQYPF MKQASQMLGS FPAPPAFASE FPSKDVALRL  300
NSASQPSSSV HVTAGMIRIR NMSMDGHGTT DWFLGKHSQY NVTLSFGVSG GDDNSTTLES  360
AVGILPGKAV SPTPIGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-49816519174NAC domain-containing protein 19
3swm_B5e-49816519174NAC domain-containing protein 19
3swm_C5e-49816519174NAC domain-containing protein 19
3swm_D5e-49816519174NAC domain-containing protein 19
3swp_A5e-49816519174NAC domain-containing protein 19
3swp_B5e-49816519174NAC domain-containing protein 19
3swp_C5e-49816519174NAC domain-containing protein 19
3swp_D5e-49816519174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022006101.11e-131NAC domain-containing protein 53-like
SwissprotQ84K001e-106NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A251SKL11e-130A0A251SKL1_HELAN; Putative NAC domain containing protein 53
STRINGMigut.F01687.1.p1e-126(Erythranthe guttata)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]