PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2128_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 468aa MW: 51272.1 Da PI: 4.1746

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2128_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.1	7.4e-32	4	80	51	128
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124 +k+++ ewyfFs dkky +g+r+nrat++gyWk+tgkd++v++ k+++vg+kktLv+++grapkg++t+Wvmh cra_locus_2128_iso_5_len_2221_ver_3 4 LKTRDLEWYFFSVLDKKYGNGSRTNRATDRGYWKTTGKDRPVYH-KSQVVGMKKTLVYHSGRAPKGQRTNWVMH 76 456778************************************.999********************** PP NAM 125 eyrl 128 eyrl cra_locus_2128_iso_5_len_2221_ver_3 77 EYRL 80 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.005	1	103	IPR003441	NAC domain
SuperFamily	SSF101941	6.02E-39	4	103	IPR003441	NAC domain
Pfam	PF02365	1.9E-14	11	80	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009644	Biological Process	response to high light intensity
GO:0009962	Biological Process	regulation of flavonoid biosynthetic process
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MSKLKTRDLE WYFFSVLDKK YGNGSRTNRA TDRGYWKTTG KDRPVYHKSQ VVGMKKTLVY 60 HSGRAPKGQR TNWVMHEYRL IDEELGKAGI SQDAFVLCRV FQKSGSGPKN GEQYGAPFVE 120 EEWEEDELEI LPKDEAADEV EVGDDAYLDG DDLKQILAAD IQTDNVSFTP NCYTGEDAAF 180 VEEATESIGD SQKLSVGAGE YDNGNNQSDD QNAYHLPVQY DMYQKAVKHE YIGESSKTAD 240 PQGVDYLLEE PFVDATDNLQ FGDGGFLETN DLSNPIDADA AGFDMLEEYL TFLDADGDIA 300 FDPLVMEGGQ NNISGESSAA EKDVEEGIET GMPSKQLEHD NDATSSKEAS SKFGSGYQYP 360 FMKQASQMLG SFPAPPAFAS EFPSKDVALR LNSASQPSSS VHVTAGMIRI RNMSMDGHGT 420 TDWFLGKHSQ YNVTLSFGVS GGDDNSTTLE SAVGILPGKA VSPTPIGW

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MSKLKTRDLE WYFFSVLDKK YGNGSRTNRA TDRGYWKTTG KDRPVYHKSQ VVGMKKTLVY  60
HSGRAPKGQR TNWVMHEYRL IDEELGKAGI SQDAFVLCRV FQKSGSGPKN GEQYGAPFVE  120
EEWEEDELEI LPKDEAADEV EVGDDAYLDG DDLKQILAAD IQTDNVSFTP NCYTGEDAAF  180
VEEATESIGD SQKLSVGAGE YDNGNNQSDD QNAYHLPVQY DMYQKAVKHE YIGESSKTAD  240
PQGVDYLLEE PFVDATDNLQ FGDGGFLETN DLSNPIDADA AGFDMLEEYL TFLDADGDIA  300
FDPLVMEGGQ NNISGESSAA EKDVEEGIET GMPSKQLEHD NDATSSKEAS SKFGSGYQYP  360
FMKQASQMLG SFPAPPAFAS EFPSKDVALR LNSASQPSSS VHVTAGMIRI RNMSMDGHGT  420
TDWFLGKHSQ YNVTLSFGVS GGDDNSTTLE SAVGILPGKA VSPTPIGW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-30	10	109	72	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-30	10	109	72	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-30	10	109	72	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-30	10	109	72	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-30	10	109	75	174	NAC domain-containing protein 19
3swm_B	8e-30	10	109	75	174	NAC domain-containing protein 19
3swm_C	8e-30	10	109	75	174	NAC domain-containing protein 19
3swm_D	8e-30	10	109	75	174	NAC domain-containing protein 19
3swp_A	8e-30	10	109	75	174	NAC domain-containing protein 19
3swp_B	8e-30	10	109	75	174	NAC domain-containing protein 19
3swp_C	8e-30	10	109	75	174	NAC domain-containing protein 19
3swp_D	8e-30	10	109	75	174	NAC domain-containing protein 19
4dul_A	8e-30	10	109	72	171	NAC domain-containing protein 19
4dul_B	8e-30	10	109	72	171	NAC domain-containing protein 19
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00059	PBM	Transfer from AT5G04410	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076897.1	0.0	NAC domain-containing protein 53 isoform X1
TrEMBL	A0A068TV21	0.0	A0A068TV21_COFCA; Uncharacterized protein
STRING	XP_009599412.1	1e-180	(Nicotiana tomentosiformis)