PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21320_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SBP

Protein Properties

Length: 88aa MW: 10200.6 Da PI: 8.7188

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21320_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	77	3e-24	32	86	1	55
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsef 55 +Cqve+C+ l+eak yhrrhkvCe+hskapvv +sg+ qrfCqqCsrf +++ f cra_locus_21320_iso_1_len_391_ver_3 32 CCQVEDCQISLKEAKPYHRRHKVCEHHSKAPVVQMSGHPQRFCQQCSRFRNFNLF 86 6************************************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-25	26	86	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	20.315	30	88	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.27E-23	31	86	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-20	33	86	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
DEDVEEENNK KKRALTLSGR RVTCAAGSTQ PCCQVEDCQI SLKEAKPYHR RHKVCEHHSK 60 APVVQMSGHP QRFCQQCSRF RNFNLFQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-17	25	86	3	64	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027159682.1	7e-32	squamosa promoter-binding protein 1
Swissprot	Q38741	5e-28	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A068TTY6	2e-29	A0A068TTY6_COFCA; Squamosa promoter-binding-like protein
STRING	VIT_10s0003g00050.t01	5e-26	(Vitis vinifera)

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]