PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21320_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

SBP

Protein Properties

Length: 115aa MW: 13268.8 Da PI: 8.7816

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21320_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.8	2.4e-41	32	108	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74 +Cqve+C+ l+eak yhrrhkvCe+hskapvv +sg+ qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrr cra_locus_21320_iso_3_len_941_ver_3 32 CCQVEDCQISLKEAKPYHRRHKVCEHHSKAPVVQMSGHPQRFCQQCSRFHDLSEFDEAKRSCRRRLAGHNERRR 105 6************************************************************************* PP S-- CS SBP 75 kkq 77 k++ cra_locus_21320_iso_3_len_941_ver_3 106 KSS 108 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.2E-34	26	94	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.676	30	107	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.06E-38	31	112	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.0E-33	33	106	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
DEDVEEENNK KKRALTLSGR RVTCAAGSTQ PCCQVEDCQI SLKEAKPYHR RHKVCEHHSK 60 APVVQMSGHP QRFCQQCSRF HDLSEFDEAK RSCRRRLAGH NERRRKSSYD SLGEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-35	33	106	11	84	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027159682.1	3e-56	squamosa promoter-binding protein 1
Swissprot	Q38741	8e-49	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A068TTY6	5e-54	A0A068TTY6_COFCA; Squamosa promoter-binding-like protein
STRING	Solyc02g077920.2.1	4e-47	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]