PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2141_iso_10

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 978aa MW: 114220 Da PI: 8.2534

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2141_iso_10	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.8e-07	262	281	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H cra_locus_2141_iso_10_len_3435_ver_3 262 CPFHLKTGACRFGTRCSRVH 281 ******************99 PP
2	zf-CCCH	27	7.6e-09	442	469	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ +C++G+ C+F+H+ cra_locus_2141_iso_10_len_3435_ver_3 442 WKVAICGEYMKSNlkICSRGSACNFIHC 469 899************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.23	256	284	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7	257	283	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.7E-5	261	281	IPR000571	Zinc finger, CCCH-type
PRINTS	PR01848	6.9E-33	262	281	IPR009145	U2 auxiliary factor small subunit
PRINTS	PR01848	6.9E-33	281	301	IPR009145	U2 auxiliary factor small subunit
Gene3D	G3DSA:3.30.70.330	3.9E-21	287	307	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50102	11.162	351	439	IPR000504	RNA recognition motif domain
SMART	SM00360	0.0022	352	435	IPR000504	RNA recognition motif domain
Gene3D	G3DSA:3.30.70.330	3.9E-21	357	437	IPR012677	Nucleotide-binding alpha-beta plait domain
SMART	SM00361	1.5E-4	367	435	IPR003954	RNA recognition motif domain, eukaryote
SuperFamily	SSF54928	2.96E-15	369	438	IPR012677	Nucleotide-binding alpha-beta plait domain
PRINTS	PR01848	6.9E-33	396	418	IPR009145	U2 auxiliary factor small subunit
PRINTS	PR01848	6.9E-33	423	447	IPR009145	U2 auxiliary factor small subunit
PROSITE profile	PS50103	10.822	441	471	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.05	441	470	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-6	442	469	IPR000571	Zinc finger, CCCH-type
PRINTS	PR01848	6.9E-33	461	473	IPR009145	U2 auxiliary factor small subunit

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000398	Biological Process	mRNA splicing, via spliceosome
GO:0089701	Cellular Component	U2AF
GO:0000166	Molecular Function	nucleotide binding
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 978 aa Download sequence Send to blast
XGRGRAANSN FYAXNKNPKT PPAGSVRISN KHPITVIGDS GGIELTIMEE NEPRSALAAE 60 SRMNRKEKRK AAKKEKRKQK RKELAEKDRW EDEVRLNDPE EQRQIQLEEE EERVRLERER 120 KEFEERERLF LEALARKKAQ EEEEEERRRV LSEEEQKLKE QDMEANGDEE WEYVEEGPPE 180 IIWQGNEIIV KKNKVRVKKK SSDNRFLEKE GENRPTSNPL PPQSEAFADY SSASGRLSAQ 240 QLLENVAQQT PNFGTEQDKA HCPFHLKTGA CRFGTRCSRV HFYPDKSCTL LIKNMYNGPG 300 LAWEQDEGLE VCXEVTTEVH HKMTEVLGPG LAWLEFKDFH SVSCTSLNNI STITIHLIPF 360 FYTEEEVEHS FEEFYEDVHT EFLKFGEIMN FKVCRNGSHH LRGNVYVHYK SLESAMFAYH 420 SISGRYFAGK QVNCEFVAVT RWKVAICGEY MKSNLKICSR GSACNFIHCF RNPGGDYEWA 480 DWDKPPPRFW VEKMAALFGY SDQSEYDKKI ETPGQFRDCS KRLMRDRDRY YYRRSQSKEI 540 ESSNRSLSDA YEEDNVRRIN IQHTNDDKRK LEVLDGRESR EETWSRHLRQ PSKKRFYDGD 600 SDRDLLNRNR DADMYQSSTR KRSRYHQKEL NDTQEACSIG CRNDAVLETD TSNRRKERYM 660 REEHRKKSSR QHEDSEHKKI SDSTDSRKAQ SSEDWESLSC NDHWDKRSYD SDSTCELSEG 720 ITGRCHNYGR KPLRHLNEAS RLPDNYIVSH KVSSKESRGK KSEQFNSERC PVRKRSSSGR 780 KYHLSRKNEV GSSDEQKLSD EEHAQKISSQ NDRRRSKSCD SDISYGSSQM GPVEFKEDLP 840 KKSKTKSVSD EKFGYDHTNQ KNQHHDDSRE SLNEDIDRRG RWEPAQVDSE KQQKHRRKSI 900 GKNDKHNIGR ASYDRSSDEY SKGSMPGGSN KLSHRKAETS SKEMDSDAKL EGRGEDGKIC 960 GRKYRSHGSK RRHKEIKP

Sequence ? help Back to Top

Protein Sequence Length: 978 aa Download sequence Send to blast

XGRGRAANSN FYAXNKNPKT PPAGSVRISN KHPITVIGDS GGIELTIMEE NEPRSALAAE  60
SRMNRKEKRK AAKKEKRKQK RKELAEKDRW EDEVRLNDPE EQRQIQLEEE EERVRLERER  120
KEFEERERLF LEALARKKAQ EEEEEERRRV LSEEEQKLKE QDMEANGDEE WEYVEEGPPE  180
IIWQGNEIIV KKNKVRVKKK SSDNRFLEKE GENRPTSNPL PPQSEAFADY SSASGRLSAQ  240
QLLENVAQQT PNFGTEQDKA HCPFHLKTGA CRFGTRCSRV HFYPDKSCTL LIKNMYNGPG  300
LAWEQDEGLE VCXEVTTEVH HKMTEVLGPG LAWLEFKDFH SVSCTSLNNI STITIHLIPF  360
FYTEEEVEHS FEEFYEDVHT EFLKFGEIMN FKVCRNGSHH LRGNVYVHYK SLESAMFAYH  420
SISGRYFAGK QVNCEFVAVT RWKVAICGEY MKSNLKICSR GSACNFIHCF RNPGGDYEWA  480
DWDKPPPRFW VEKMAALFGY SDQSEYDKKI ETPGQFRDCS KRLMRDRDRY YYRRSQSKEI  540
ESSNRSLSDA YEEDNVRRIN IQHTNDDKRK LEVLDGRESR EETWSRHLRQ PSKKRFYDGD  600
SDRDLLNRNR DADMYQSSTR KRSRYHQKEL NDTQEACSIG CRNDAVLETD TSNRRKERYM  660
REEHRKKSSR QHEDSEHKKI SDSTDSRKAQ SSEDWESLSC NDHWDKRSYD SDSTCELSEG  720
ITGRCHNYGR KPLRHLNEAS RLPDNYIVSH KVSSKESRGK KSEQFNSERC PVRKRSSSGR  780
KYHLSRKNEV GSSDEQKLSD EEHAQKISSQ NDRRRSKSCD SDISYGSSQM GPVEFKEDLP  840
KKSKTKSVSD EKFGYDHTNQ KNQHHDDSRE SLNEDIDRRG RWEPAQVDSE KQQKHRRKSI  900
GKNDKHNIGR ASYDRSSDEY SKGSMPGGSN KLSHRKAETS SKEMDSDAKL EGRGEDGKIC  960
GRKYRSHGSK RRHKEIKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4yh8_A	3e-16	362	468	64	167	Splicing factor U2AF 23 kDa subunit

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	80	KKEKRKQKR
2	653	666	RRKERYMREEHRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027163709.1	0.0	zinc finger CCCH domain-containing protein 5
TrEMBL	A0A2G2W8H1	0.0	A0A2G2W8H1_CAPBA; Zinc finger CCCH domain-containing protein 5