PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2141_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 381aa MW: 44239.2 Da PI: 6.373

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2141_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	262	281	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H cra_locus_2141_iso_9_len_1250_ver_3 262 CPFHLKTGACRFGTRCSRVH 281 ******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.23	256	284	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-5	261	281	IPR000571	Zinc finger, CCCH-type
PRINTS	PR01848	1.2E-12	262	281	IPR009145	U2 auxiliary factor small subunit
PRINTS	PR01848	1.2E-12	281	301	IPR009145	U2 auxiliary factor small subunit

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000398	Biological Process	mRNA splicing, via spliceosome
GO:0089701	Cellular Component	U2AF
GO:0000166	Molecular Function	nucleotide binding
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
XGRGRAANSN FYAXNKNPKT PPAGSVRISN KHPITVIGDS GGIELTIMEE NEPRSALAAE 60 SRMNRKEKRK AAKKEKRKQK RKELAEKDRW EDEVRLNDPE EQRQIQLEEE EERVRLERER 120 KEFEERERLF LEALARKKAQ EEEEEERRRV LSEEEQKLKE QDMEANGDEE WEYVEEGPPE 180 IIWQGNEIIV KKNKVRVKKK SSDNRFLEKE GENRPTSNPL PPQSEAFADY SSASGRLSAQ 240 QLLENVAQQT PNFGTEQDKA HCPFHLKTGA CRFGTRCSRV HFYPDKSCTL LIKNMYNGPG 300 LAWEQDEGLE XXXXXXXXXX XXXXXXLAQQ ATSLLHIKGI IIYNAHIYSD AHEMRAHKLC 360 QLVCEMDSCS YHDLRVITMI H

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

XGRGRAANSN FYAXNKNPKT PPAGSVRISN KHPITVIGDS GGIELTIMEE NEPRSALAAE  60
SRMNRKEKRK AAKKEKRKQK RKELAEKDRW EDEVRLNDPE EQRQIQLEEE EERVRLERER  120
KEFEERERLF LEALARKKAQ EEEEEERRRV LSEEEQKLKE QDMEANGDEE WEYVEEGPPE  180
IIWQGNEIIV KKNKVRVKKK SSDNRFLEKE GENRPTSNPL PPQSEAFADY SSASGRLSAQ  240
QLLENVAQQT PNFGTEQDKA HCPFHLKTGA CRFGTRCSRV HFYPDKSCTL LIKNMYNGPG  300
LAWEQDEGLE XXXXXXXXXX XXXXXXLAQQ ATSLLHIKGI IIYNAHIYSD AHEMRAHKLC  360
QLVCEMDSCS YHDLRVITMI H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	80	KKEKRKQKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252404.1	5e-94	PREDICTED: zinc finger CCCH domain-containing protein 5
Refseq	XP_019052712.1	5e-94	PREDICTED: zinc finger CCCH domain-containing protein 5
Swissprot	Q9SY74	5e-88	C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBL	A0A1U8Q270	1e-92	A0A1U8Q270_NELNU; zinc finger CCCH domain-containing protein 5
STRING	XP_010252404.1	2e-93	(Nelumbo nucifera)

Publications ? help Back to Top
Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W Pre-mRNA splicing in higher plants. Trends Plant Sci., 2000. 5(4): p. 160-7 [PMID:10740297] Domon C,Lorković ZJ,Valcárcel J,Filipowicz W Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants. J. Biol. Chem., 1998. 273(51): p. 34603-10 [PMID:9852132]