PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21461_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

YABBY

Protein Properties

Length: 96aa MW: 10894 Da PI: 11.308

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21461_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	132.3	6.1e-41	10	88	94	170
YABBY 94 tsvsseklsenedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 +++ss+++ ++ + +++ p v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ cra_locus_21461_iso_1_len_356_ver_3 10 SNNSSSRMAIQQCSNPSKPEPriVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 83 333444444444444444444459************************************************ PP YABBY 166 ihfgl 170 i fgl cra_locus_21461_iso_1_len_356_ver_3 84 INFGL 88 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-39	10	88	IPR006780	YABBY protein
SuperFamily	SSF47095	2.49E-9	23	81	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.4E-5	36	82	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
XLGSSSKWSS NNSSSRMAIQ QCSNPSKPEP RIVNRPPEKR QRVPSAYNQF IKEEIQRIKA 60 NNPDISHREA FSTAAKNWAH FPHINFGLML GTNNRA

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078402.1	1e-44	axial regulator YABBY 5
Swissprot	Q8GW46	5e-40	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	Q6SRZ9	2e-42	Q6SRZ9_ANTMA; YABBY-like transcription factor PROLONGATA
STRING	XP_010687959.1	3e-43	(Beta vulgaris)

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]