PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21461_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

YABBY

Protein Properties

Length: 112aa MW: 12604.4 Da PI: 10.8058

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21461_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	135.9	4.9e-42	10	88	94	170
YABBY 94 tsvsseklsenedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 +++ss+++ ++ + +++ p v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ cra_locus_21461_iso_2_len_333_ver_3 10 SNNSSSRMAIQQCSNPSKPEPriVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPH 83 333344444444444444444459************************************************ PP YABBY 166 ihfgl 170 ihfgl cra_locus_21461_iso_2_len_333_ver_3 84 IHFGL 88 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.6E-40	10	88	IPR006780	YABBY protein
SuperFamily	SSF47095	3.93E-9	24	81	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.9E-5	36	82	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
XLGSSSKWSS NNSSSRMAIQ QCSNPSKPEP RIVNRPPEKR QRVPSAYNQF IKEEIQRIKA 60 NNPDISHREA FSTAAKNWAH FPHIHFGLML ESNNQAKLAC GSRKLSNAXS CX

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006358281.1	2e-51	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016579960.1	3e-51	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016579962.1	2e-51	PREDICTED: axial regulator YABBY 5-like isoform X3
Swissprot	Q8GW46	1e-44	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0V0GXA6	1e-50	A0A0V0GXA6_SOLCH; Putative axial regulator YABBY 5-like
STRING	PGSC0003DMT400079392	1e-50	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]