PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2164_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 237aa MW: 27251.8 Da PI: 9.7102

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2164_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	6e-17	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l ++++ +G g+W+t +++ g+ R++k+c++rw +yl cra_locus_2164_iso_2_len_936_ver_3 11 KGAWTKQEDEKLTNYIRTHGEGCWRTLPKEAGLQRCGKSCRLRWINYL 58 79********************************************97 PP
2	Myb_DNA-binding	51.8	1.8e-16	64	108	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+v+++++lG++ W++Ia +++ gRt++++k++w+++ cra_locus_2164_iso_2_len_936_ver_3 64 RGNFAQDEEDLIVKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 108 89999***************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.029	6	58	IPR017930	Myb domain
SuperFamily	SSF46689	2.85E-28	8	105	IPR009057	Homeodomain-like
SMART	SM00717	8.9E-13	10	60	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-15	11	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-22	12	65	IPR009057	Homeodomain-like
CDD	cd00167	4.12E-10	13	58	No hit	No description
PROSITE profile	PS51294	26.151	59	113	IPR017930	Myb domain
SMART	SM00717	8.7E-15	63	111	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	64	108	IPR001005	SANT/Myb domain
CDD	cd00167	1.40E-9	66	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-25	66	114	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MRKPCCEGKN KGAWTKQEDE KLTNYIRTHG EGCWRTLPKE AGLQRCGKSC RLRWINYLRP 60 DIKRGNFAQD EEDLIVKLHA LLGNRWSLIA GRLPGRTDNE VKNYWNSHIR RKLIKMGIDP 120 NNHRPKTIPG FQNRRLDTIS PSKPPIYGDD DDEQVVSDGT SGFINDDEKR LRTNCDINLD 180 LTIAFPSPSP SSSPKYSING EIKKKELTNK SQYNMNNNKF STKEVEGESF PTLVLFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-27	11	113	7	108	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891126.1	4e-93	transcription repressor MYB6-like
Swissprot	P81393	3e-73	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2I4EC22	7e-90	A0A2I4EC22_JUGRE; transcription repressor MYB6-like
STRING	XP_008229231.1	7e-90	(Prunus mume)
STRING	VIT_14s0006g01620.t01	5e-90	(Vitis vinifera)
STRING	XP_008381316.1	7e-90	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]