PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21690_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 236aa MW: 26121.7 Da PI: 4.9268

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21690_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.4	8.5e-19	50	100	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g+ cra_locus_21690_iso_2_len_877_ver_3 50 TYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 100 69**887.******843...6*********************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.9E-13	50	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.0E-32	50	108	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-22	50	108	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.709	50	107	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-36	50	113	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.1E-10	51	62	IPR001471	AP2/ERF domain
CDD	cd00018	7.69E-32	51	109	No hit	No description
PRINTS	PR00367	1.1E-10	73	89	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
XSSTTSSSSF STNSNSRKGQ NGEIDLKKKK KKSNNNINGG GGEDDEKHPT YRGVRKRNWG 60 KWVSEIREPR KKSRIWLGTY PTAEMAARAH DVAALAIKGH SAFLNFPHLA HELPRPASTL 120 PKDIQAAAAK AAASITFSAE SRDGDDDDQX REEEEDQPPI NRSELPNSHS SSDLSSENSQ 180 LESSTSNSNS NSPENDDDTF FNLPDLSIDV AGDHIDGYCF YDSGFRLEEP FLWDCY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	38	108	3	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00312	DAP	Transfer from AT2G44940	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089857.1	1e-73	ethylene-responsive transcription factor ERF034
Swissprot	Q8LBQ7	3e-56	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2G9GT81	2e-72	A0A2G9GT81_9LAMI; Uncharacterized protein
STRING	XP_009613551.1	3e-68	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]