PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21743_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 172aa    MW: 19839.5 Da    PI: 4.1654
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21743_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.91.7e-224742998
                                  NAM 29 eleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98
                                         el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v s+++ 
  cra_locus_21743_iso_1_len_573_ver_3  4 EL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSSQNTX 74
                                         45.78**************84335556888************************************996554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.3771117IPR003441NAC domain
SuperFamilySSF1019413.92E-24481IPR003441NAC domain
PfamPF023652.8E-63182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
QEIELDIIPE VDLYKCEPWE LAEKSFLPSR DPEWYFFGPR DRKYPNGFRT NRATRAGYWK  60
STGKDRRVSS QNTXYALCRV FKKNGICSEI EEQGQSSNSL SLLDYSSQGV VINEYEQTFS  120
PDVPLASSSC MDEEDKEDKD DSWMQFITDD AWCSSTNPFG NEEVVAQLTF TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-2118140118Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374257.11e-83NAC domain-containing protein 86 isoform X2
RefseqXP_024442302.11e-83NAC domain-containing protein 86 isoform X1
RefseqXP_027168991.11e-83NAC domain-containing protein 86 isoform X1
RefseqXP_027168992.11e-83NAC domain-containing protein 86 isoform X2
TrEMBLA0A068TRH53e-86A0A068TRH5_COFCA; Uncharacterized protein
STRINGPOPTR_0015s05450.14e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46212442