PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21743_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 142aa    MW: 16185.4 Da    PI: 3.9753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21743_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.33.9e-12228102128
                                  NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                                          +kktLv+y+grap+g +tdWvmheyrl
  cra_locus_21743_iso_2_len_483_ver_3   2 MKKTLVYYRGRAPQGIRTDWVMHEYRL 28 
                                          9************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.541153IPR003441NAC domain
PfamPF023651.5E-4228IPR003441NAC domain
SuperFamilySSF1019412.09E-15254IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
XMKKTLVYYR GRAPQGIRTD WVMHEYRLDD KESDQDTSGI QVDSYALCRV FKKNGICSEI  60
EEQGQSSNSL SLLDYSSQGV VINEYEQTFS PDVPLASSSC MDEEDKEDKD DSWMQFITDD  120
AWCSSTNPFG NEEVVAQLTF TN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442302.14e-66NAC domain-containing protein 86 isoform X1
TrEMBLA0A2K1XH729e-65A0A2K1XH72_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05450.16e-63(Populus trichocarpa)