PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21821_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 481aa MW: 52364.3 Da PI: 6.029

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21821_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.8	6.9e-31	225	283	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ cra_locus_21821_iso_1_len_1826_ver_3 225 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 283 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.006	219	285	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.1E-31	220	285	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	222	285	IPR003657	WRKY domain
SMART	SM00774	1.2E-37	224	284	IPR003657	WRKY domain
Pfam	PF03106	7.5E-26	226	283	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MENNNYQGDL ADIIRATGGG TIHEAASEVT SVKDSWQFMN NQIDEFGDPF SNVRDPLLHD 60 LHMPTSSSSS FFNTTDDIIV ISSKVDNTNG GFDGSSSSGG GGKEISPEQE IIIRRPTNDN 120 NMFSRMVQIS PHAKLTPSPS PAAPSPKGSL LAAGNELMIS NSKASSSLVE NTSIGGGGTG 180 GGGVQISSPR NTGLKRRKSQ AKKVVCIPAP APANSRPSSG EVVPSDLWAW RKYGQKPIKG 240 SPYPRGYYRC SSSKGCSARK QVERSRNDPN MLVITYTSEH NHPWPTQRNA LAGSTRSSSH 300 PSKSIAMAAS SSSKTTAAHQ KTTNYLKEES EEQNDIQRLL LLNDNNQSAA VKKEEVIEDH 360 KQQMDVLEDI HEFTTEEGFQ HSYKPSSLPY DESHTNNSSR SEDFFADLGE LEADPLNLLF 420 SQGYSGVVED DHAGRENKAA AASSLDPLFG FYDWTGNNNK KSNNYSIQEG SNHQQQQQQP 480 F

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MENNNYQGDL ADIIRATGGG TIHEAASEVT SVKDSWQFMN NQIDEFGDPF SNVRDPLLHD  60
LHMPTSSSSS FFNTTDDIIV ISSKVDNTNG GFDGSSSSGG GGKEISPEQE IIIRRPTNDN  120
NMFSRMVQIS PHAKLTPSPS PAAPSPKGSL LAAGNELMIS NSKASSSLVE NTSIGGGGTG  180
GGGVQISSPR NTGLKRRKSQ AKKVVCIPAP APANSRPSSG EVVPSDLWAW RKYGQKPIKG  240
SPYPRGYYRC SSSKGCSARK QVERSRNDPN MLVITYTSEH NHPWPTQRNA LAGSTRSSSH  300
PSKSIAMAAS SSSKTTAAHQ KTTNYLKEES EEQNDIQRLL LLNDNNQSAA VKKEEVIEDH  360
KQQMDVLEDI HEFTTEEGFQ HSYKPSSLPY DESHTNNSSR SEDFFADLGE LEADPLNLLF  420
SQGYSGVVED DHAGRENKAA AASSLDPLFG FYDWTGNNNK KSNNYSIQEG SNHQQQQQQP  480
F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-24	199	286	3	80	Disease resistance protein RRS1
5w3x_D	1e-24	199	286	3	80	Disease resistance protein RRS1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00171	DAP	Transfer from AT1G30650	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087794.1	1e-132	probable WRKY transcription factor 14
TrEMBL	A0A2G9HJZ5	1e-134	A0A2G9HJZ5_9LAMI; Uncharacterized protein
STRING	cassava4.1_027742m	1e-119	(Manihot esculenta)