PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21821_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 482aa    MW: 52492.4 Da    PI: 6.029
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21821_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-31225283259
                                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  cra_locus_21821_iso_2_len_1829_ver_3 225 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 283
                                           699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.006219285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-31220285IPR003657WRKY domain
SuperFamilySSF1182901.7E-26222285IPR003657WRKY domain
SMARTSM007741.2E-37224284IPR003657WRKY domain
PfamPF031067.5E-26226283IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MENNNYQGDL ADIIRATGGG TIHEAASEVT SVKDSWQFMN NQIDEFGDPF SNVRDPLLHD  60
LHMPTSSSSS FFNTTDDIIV ISSKVDNTNG GFDGSSSSGG GGKEISPEQE IIIRRPTNDN  120
NMFSRMVQIS PHAKLTPSPS PAAPSPKGSL LAAGNELMIS NSKASSSLVE NTSIGGGGTG  180
GGGVQISSPR NTGLKRRKSQ AKKVVCIPAP APANSRPSSG EVVPSDLWAW RKYGQKPIKG  240
SPYPRGYYRC SSSKGCSARK QVERSRNDPN MLVITYTSEH NHPWPTQRNA LAGSTRSSSH  300
PSKSIAMAAS SSSKTTAAHQ KTTNYLKEES EEQNDIQRLL LLNDNNQSAA VKKEEVIEDH  360
KQQMDVLEDI HEFTTEEGFQ HSYKPSSLPY DESHTNNSSR SEDFFADLGE LEADPLNLLF  420
SQGYSGVVED DHAGRENKAA AASSLDPLFG FYDWTGNNNK KSNNYSIQEG SNHQQQQQQQ  480
PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24199286380Disease resistance protein RRS1
5w3x_D1e-24199286380Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087794.11e-132probable WRKY transcription factor 14
TrEMBLA0A2G9HJZ51e-134A0A2G9HJZ5_9LAMI; Uncharacterized protein
STRINGcassava4.1_027742m1e-119(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433