PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_21839_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 223aa MW: 24769 Da PI: 9.3225

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_21839_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.2e-06	23	43	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f r G C yG +CkF H+ cra_locus_21839_iso_1_len_949_ver_3 23 ICLQFKR-GKCYYGVNCKFVHD 43 6888888.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.981	18	45	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	20	45	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-5	21	44	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSTRASNSGH LAQSGTDFKR AQICLQFKRG KCYYGVNCKF VHDDGTRDGR NILGSEGLAM 60 RIRERPHSGF GGAQNFDGNL ALHRENDAIT LVDPRENYER ISSYYAGKNT EETVALKREN 120 DAITLVNLQA PMKKRLAITG KELVAAHLEF IANLLMEKQK LIQDSGKALA AAGTNADATE 180 GATSTKKGFK IAYEQLENGR KRLIWWTDVK QVNGIYADWI DSV