PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21851_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 345aa    MW: 39291.4 Da    PI: 6.9958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21851_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017426123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                          ++C+ C + Fs+   L  H+r+H
  cra_locus_21851_iso_1_len_1215_ver_3  4 HQCKLCLRNFSNGRALGGHMRSH 26
                                          79********************9 PP
2zf-C2H210.70.0016212234123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           y+C+ C+k F++   L  H  +H
  cra_locus_21851_iso_1_len_1215_ver_3 212 YRCETCKKGFRSYQALGGHRASH 234
                                           9***********99999998887 PP
3zf-C2H211.10.0013265287123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           +kCp C + Fs+   L  H rtH
  cra_locus_21851_iso_1_len_1215_ver_3 265 HKCPVCFRIFSSGQALGGHKRTH 287
                                           79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.3426IPR015880Zinc finger, C2H2-like
PfamPF139125.2E-6426IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.088212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471212239IPR007087Zinc finger, C2H2
SuperFamilySSF576677.42E-8212287No hitNo description
PfamPF139128.0E-10212236IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
PfamPF139122.9E-9264287IPR007087Zinc finger, C2H2
SMARTSM003550.19265287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286265287IPR007087Zinc finger, C2H2
PROSITE patternPS000280267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEKHQCKLCL RNFSNGRALG GHMRSHVMNL YVKSNPNKNQ TQFSEEETES LPSSSSSSSS  60
SEEEEEEIET NRGLISNGVL EKFKFRKRNW LSSMEPNDQF SAVLQGDRES ETESSKKSSS  120
FRRSKRIRRS RISEFSNVKQ EEEPNRGKSP IESEFSPLLL DQEPEESSIS DITPEEDVAY  180
CLMMLSRDKW NEESEEFGGK KGKKQNRNRG KYRCETCKKG FRSYQALGGH RASHKRSKVS  240
EEQESSSMVE TNNNNEEEEE KKKVHKCPVC FRIFSSGQAL GGHKRTHGLI INQSAAMAAA  300
AAANNNNRPF SRIGRETLID LNLPAPMEDE LSAVSDDEFL NYNRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022862920.18e-79zinc finger protein ZAT4-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480