PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21851_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 344aa    MW: 39162.3 Da    PI: 7.2405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21851_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017426123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                          ++C+ C + Fs+   L  H+r+H
  cra_locus_21851_iso_2_len_1212_ver_3  4 HQCKLCLRNFSNGRALGGHMRSH 26
                                          79********************9 PP
2zf-C2H210.70.0016211233123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           y+C+ C+k F++   L  H  +H
  cra_locus_21851_iso_2_len_1212_ver_3 211 YRCETCKKGFRSYQALGGHRASH 233
                                           9***********99999998887 PP
3zf-C2H211.10.0013264286123
                                           EEETTTTEEESSHHHHHHHHHHT CS
                               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                           +kCp C + Fs+   L  H rtH
  cra_locus_21851_iso_2_len_1212_ver_3 264 HKCPVCFRIFSSGQALGGHKRTH 286
                                           79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.2E-6426IPR007087Zinc finger, C2H2
SMARTSM003550.3426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576677.27E-8211286No hitNo description
PfamPF139128.0E-10211235IPR007087Zinc finger, C2H2
SMARTSM003550.088211233IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471211238IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
PfamPF139122.9E-9263286IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286264286IPR007087Zinc finger, C2H2
SMARTSM003550.19264286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEKHQCKLCL RNFSNGRALG GHMRSHVMNL YVKSNPNKNQ TQFSEEETES LPSSSSSSSS  60
SEEEEEIETN RGLISNGVLE KFKFRKRNWL SSMEPNDQFS AVLQGDRESE TESSKKSSSF  120
RRSKRIRRSR ISEFSNVKQE EEPNRGKSPI ESEFSPLLLD QEPEESSISD ITPEEDVAYC  180
LMMLSRDKWN EESEEFGGKK GKKQNRNRGK YRCETCKKGF RSYQALGGHR ASHKRSKVSE  240
EQESSSMVET NNNNEEEEEK KKVHKCPVCF RIFSSGQALG GHKRTHGLII NQSAAMAAAA  300
AANNNNRPFS RIGRETLIDL NLPAPMEDEL SAVSDDEFLN YNRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo