PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21919_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CPP
Protein Properties Length: 214aa    MW: 23338.9 Da    PI: 8.8779
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21919_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.32.1e-15126165242
                                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                                          ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  cra_locus_21919_iso_1_len_639_ver_3 126 KQKQCNCKHSRCLKLYCECFASGVYCDG-CNCVNCHNNVEN 165
                                          89**************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-17125165IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.624126214IPR005172CRC domain
PfamPF036382.6E-12127162IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
XPAATDFPAK KLARQLDFTG YTGASSSASL TASLPEHPNQ SQPSAAVLKP SHPQPQQLPQ  60
PQPHAFKPSQ PPKPQSQPQP PIMLMPMQQP PGPPAAHPSM RPLKPESPRP RPRSNNSEAK  120
DGTPKKQKQC NCKHSRCLKL YCECFASGVY CDGCNCVNCH NNVENEAARR EAVEATLERN  180
PNAFRPKIAS SPHGARDTRC FGLMQEETGE ALIX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-111271991183Protein lin-54 homolog
5fd3_B6e-111271991183Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078441.16e-85protein tesmin/TSO1-like CXC 5
SwissprotQ9SL706e-53TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A068U4912e-77A0A068U491_COFCA; Uncharacterized protein
STRINGXP_010105053.18e-74(Morus notabilis)