PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_21919_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CPP
Protein Properties Length: 362aa    MW: 39436.4 Da    PI: 9.0729
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_21919_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.24.5e-15126165242
                                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                                           ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ e+
  cra_locus_21919_iso_3_len_1152_ver_3 126 KQKQCNCKHSRCLKLYCECFASGVYCDG-CNCVNCHNNVEN 165
                                           89**************************.********9875 PP
2TCR51.91.5e-16210249140
                                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                           k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  cra_locus_21919_iso_3_len_1152_ver_3 210 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCLDCKNYE 249
                                           589***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-17125165IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.818126250IPR005172CRC domain
PfamPF036385.6E-12127162IPR005172CRC domain
SMARTSM011146.6E-20210251IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.8E-13213248IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
XPAATDFPAK KLARQLDFTG YTGASSSASL TASLPEHPNQ SQPSAAVLKP SHPQPQQLPQ  60
PQPHAFKPSQ PPKPQSQPQP PIMLMPMQQP PGPPAAHPSM RPLKPESPRP RPRSNNSEAK  120
DGTPKKQKQC NCKHSRCLKL YCECFASGVY CDGCNCVNCH NNVENEAARR EAVEATLERN  180
PNAFRPKIAS SPHGARDTRE ETGEALILAK HNKGCHCKKS GCLKKYCECF QANILCSDNC  240
KCLDCKNYEG SEERQALFHG DHANNMAYIQ QAANAAITGA IGSSGYGSPP VSKKRKGQEL  300
FFGATVKDPL HRLGQFQQAN HMKTSIPSSS LSSIPGARLG NPAGVGPSKF TYRYEQFICE  360
KF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3212725911132Protein lin-54 homolog
5fd3_B2e-3212725911132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027175984.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-132TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A068U4910.0A0A068U491_COFCA; Uncharacterized protein
STRINGXP_010105053.11e-169(Morus notabilis)