PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22026_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HSF

Protein Properties

Length: 115aa MW: 14156.2 Da PI: 10.1097

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22026_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	24.7	6e-08	2	39	53	102
HHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 53 FvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 F+RQLn+Y + +k weF+h++F+kgk++ll +i+rkk cra_locus_22026_iso_1_len_365_ver_3 2 FIRQLNTYK-----TASK-------RWEFQHEKFQKGKRNLLVEIQRKKC 39 899999993.....3333.......4**********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	5.98E-5	2	37	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.2E-6	2	37	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	9.8E-6	2	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
XFIRQLNTYK TASKRWEFQH EKFQKGKRNL LVEIQRKKCE PSAFPQYLKA SEEKTMDQED 60 RRRLKLMEEN KNLRKERSEL EMQIAHFKTL ELKLLDCLSH YMDTHDLHNK LRRLC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105264.1	3e-49	heat stress transcription factor B-2a-like
Refseq	XP_027111776.1	3e-49	heat stress transcription factor B-2a-like
Refseq	XP_027162879.1	3e-49	heat stress transcription factor B-2a-like
TrEMBL	A0A068TTC0	2e-47	A0A068TTC0_COFCA; Uncharacterized protein
STRING	XP_010108202.1	1e-46	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10707	18	23