PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2220_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 458aa MW: 51280.7 Da PI: 8.0735

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2220_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.7e-10	362	409	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v q+G g+W+ I + + +Rt+ ++k++w+++l cra_locus_2220_iso_3_len_1798_ver_3 362 WTVSEVKKLIDGVSQYGVGRWSHIKKDLFsssAHRTAVDLKDKWRNLL 409 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.901	354	413	IPR017930	Myb domain
SuperFamily	SSF46689	1.05E-15	356	419	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-13	356	414	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-10	358	411	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-8	362	409	IPR001005	SANT/Myb domain
CDD	cd11660	1.82E-20	362	410	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
XTCEDYLLGE LLAXNIESGE SITKLDYHLG KGSQNLVLES HTEENKAGYN GPPQESQLSC 60 PIDWMHDFPE DLDMNDYESN GIFSCSPNSE LSADRWFKYP TSFPVESIEQ LEDVSGMFPV 120 KNEKNTTSSP GLKSEEMFCS SITEQQNVYE SVGQHAEGEP NIGQDVSRCP PQGSVICPPT 180 GKRLRKPPHR FIDELLEPNS RQVRRKFSIP ASKGKSSNVK HHKHYCVKSK AERSFSGEPA 240 AIAIQVPFGP LICEEREKKQ VPVVTKVIHP KPIASMAISE GDCISSRKKQ TPVAPKVLHS 300 KPIASVAKSE EDFVSSQQMQ LCIVPKVLDS EPVASVATSG EDSLSIMKTV EEGGRRKHHI 360 LWTVSEVKKL IDGVSQYGVG RWSHIKKDLF SSSAHRTAVD LKDKWRNLLK ATCVQTEGKR 420 GEDKKRNLAW RPLPKSVIRR VRELAVLYPY PRDFQTKH

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

XTCEDYLLGE LLAXNIESGE SITKLDYHLG KGSQNLVLES HTEENKAGYN GPPQESQLSC  60
PIDWMHDFPE DLDMNDYESN GIFSCSPNSE LSADRWFKYP TSFPVESIEQ LEDVSGMFPV  120
KNEKNTTSSP GLKSEEMFCS SITEQQNVYE SVGQHAEGEP NIGQDVSRCP PQGSVICPPT  180
GKRLRKPPHR FIDELLEPNS RQVRRKFSIP ASKGKSSNVK HHKHYCVKSK AERSFSGEPA  240
AIAIQVPFGP LICEEREKKQ VPVVTKVIHP KPIASMAISE GDCISSRKKQ TPVAPKVLHS  300
KPIASVAKSE EDFVSSQQMQ LCIVPKVLDS EPVASVATSG EDSLSIMKTV EEGGRRKHHI  360
LWTVSEVKKL IDGVSQYGVG RWSHIKKDLF SSSAHRTAVD LKDKWRNLLK ATCVQTEGKR  420
GEDKKRNLAW RPLPKSVIRR VRELAVLYPY PRDFQTKH