PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2220_iso_9

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 480aa MW: 53777.7 Da PI: 7.566

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2220_iso_9	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32	2.9e-10	384	431	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E ++l+d+v q+G g+W+ I + + +Rt+ ++k++w+++l cra_locus_2220_iso_9_len_1865_ver_3 384 WTVSEVKKLIDGVSQYGVGRWSHIKKDLFsssAHRTAVDLKDKWRNLL 431 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.901	376	435	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-13	378	436	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-15	378	441	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-10	380	433	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-8	384	431	IPR001005	SANT/Myb domain
CDD	cd11660	2.04E-20	384	432	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
XEHLLGQEVR DIMPNENESG KLQAPNALLT CEDYLLDIES GESITKLDYH LGKGSQNLVL 60 ESHTEENKAG YNGPPQESQL SCPIDWMHDF PEDLDMNDYE SNGIFSCSPN SELSADRWFK 120 YPTSFPVESI EQLEDVSGMF PVKNEKNTTS SPGLKSEEMF CSSITEQQNV YESVGQHAEG 180 EPNIGQDVSR CPPQGSVICP PTGKRLRKPP HRFIDELLEP NSRQVRRKFS IPASKGKSSN 240 VKHHKHYCVK SKAERSFSGE PAAIAIQVPF GPLICEEREK KQVPVVTKVI HPKPIASMAI 300 SEGDCISSRK KQTPVAPKVL HSKPIASVAK SEEDFVSSQQ MQLCIVPKVL DSEPVASVAT 360 SGEDSLSIMK TVEEGGRRKH HILWTVSEVK KLIDGVSQYG VGRWSHIKKD LFSSSAHRTA 420 VDLKDKWRNL LKATCVQTEG KRGEDKKRNL AWRPLPKSVI RRVRELAVLY PYPRDFQTKH

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

XEHLLGQEVR DIMPNENESG KLQAPNALLT CEDYLLDIES GESITKLDYH LGKGSQNLVL  60
ESHTEENKAG YNGPPQESQL SCPIDWMHDF PEDLDMNDYE SNGIFSCSPN SELSADRWFK  120
YPTSFPVESI EQLEDVSGMF PVKNEKNTTS SPGLKSEEMF CSSITEQQNV YESVGQHAEG  180
EPNIGQDVSR CPPQGSVICP PTGKRLRKPP HRFIDELLEP NSRQVRRKFS IPASKGKSSN  240
VKHHKHYCVK SKAERSFSGE PAAIAIQVPF GPLICEEREK KQVPVVTKVI HPKPIASMAI  300
SEGDCISSRK KQTPVAPKVL HSKPIASVAK SEEDFVSSQQ MQLCIVPKVL DSEPVASVAT  360
SGEDSLSIMK TVEEGGRRKH HILWTVSEVK KLIDGVSQYG VGRWSHIKKD LFSSSAHRTA  420
VDLKDKWRNL LKATCVQTEG KRGEDKKRNL AWRPLPKSVI RRVRELAVLY PYPRDFQTKH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9155	17	23