PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22298_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

S1Fa-like

Protein Properties

Length: 89aa MW: 9880.69 Da PI: 10.0784

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22298_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	135.4	1.3e-42	24	89	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +eakG+nPGlivll+vgglll+fl+gny+ly+yaqk+lPP+kkkPvskkk+k+e+lkqGv++PGe cra_locus_22298_iso_1_len_755_ver_3 24 DAEAKGFNPGLIVLLLVGGLLLTFLIGNYVLYIYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE 89 68***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	0.008	24	89	No hit	No description
Pfam	PF04689	1.4E-40	25	89	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MDYEGDFDDH APPAFDRMKN VGMDAEAKGF NPGLIVLLLV GGLLLTFLIG NYVLYIYAQK 60 TLPPKKKKPV SKKKMKKERL KQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024983185.1	8e-34	DNA-binding protein S1FA-like
Swissprot	Q42337	6e-16	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	B9SGP8	7e-29	B9SGP8_RICCO; DNA-binding protein S1FA, putative
STRING	Lus10023177	3e-31	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3174	22	49