PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22298_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family S1Fa-like
Protein Properties Length: 87aa    MW: 9634.41 Da    PI: 10.2242
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22298_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.61.2e-422287570
                                 S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                          +eakG+nPGlivll+vgglll+fl+gny+ly+yaqk+lPP+kkkPvskkk+k+e+lkqGv++PGe
  cra_locus_22298_iso_2_len_662_ver_3 22 DAEAKGFNPGLIVLLLVGGLLLTFLIGNYVLYIYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE 87
                                         68***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.012287No hitNo description
PfamPF046891.3E-402387IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
YEGDFDDHAP PAFDRMKNVG MDAEAKGFNP GLIVLLLVGG LLLTFLIGNY VLYIYAQKTL  60
PPKKKKPVSK KKMKKERLKQ GVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024983185.14e-32DNA-binding protein S1FA-like
SwissprotQ423376e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLB9SGP81e-27B9SGP8_RICCO; DNA-binding protein S1FA, putative
STRINGLus100231777e-31(Linum usitatissimum)