PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22365_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 403aa    MW: 44672.6 Da    PI: 6.8716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22365_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08156176526
                                           --SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                            C++f++ G Ck Gd+C FaHg
  cra_locus_22365_iso_1_len_1845_ver_3 156 ACPDFRK-GNCKKGDSCEFAHG 176
                                           7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-6151177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.051152178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6155178IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6156176IPR000571Zinc finger, CCCH-type
SMARTSM003565.5186209IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.563186210IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
XIGERNSLHP MVHVPPWSSF VDNQTVDIPY TSLSPNSNVN SSPNSFSATA AADDYSFCLQ  60
NDGLAAFQRF LPSNRNSNLE EFLVDDFDSE GGGDGFLKGL DHPVDAYSCD QFRIFEFKVK  120
KCTRGRSHDW TECPYAHPGE KARRRDPRKY HYSGTACPDF RKGNCKKGDS CEFAHGVFEC  180
WLHPARYRTQ PCKDGLNCKR RVCFFAHSPD QLRVLSPRVD SYDGSPHRLA FEGKTLHFLS  240
SPESGSPPSE SPPMSPMTAS NSINSLSRSL GSNSINEIVA SLRQLQLNKV KSMPSSWGLQ  300
INSPGVGSPR VGLARPGFCS LPSTPTRAVA RPGIGYFDAW DKSGCEEEPL MERVESGRDL  360
RARMFEKLCK ENPLDRVDPN PVGNEGPSDD PNPDVGWVSD LIK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608132.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
RefseqXP_016445906.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-127C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1S3Y1A10.0A0A1S3Y1A1_TOBAC; zinc finger CCCH domain-containing protein 20-like
STRINGXP_009608132.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]