PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22369_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 91aa    MW: 10160.3 Da    PI: 10.1835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22369_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.6e-093582154
                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                                          s++kGV     +g W A+I+       + +r++lg+f ++ e a a++ a  kl+
  cra_locus_22369_iso_3_len_1323_ver_3 35 SKFKGVVLQQ-NGHWGAQIYA------NhQRIWLGTFKSEVESAMAYDSASIKLR 82
                                          79****9887.8******999......44**********99*********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.2E-9391IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541715.62E-143591IPR016177DNA-binding domain
CDDcd000181.79E-223591No hitNo description
PfamPF008479.0E-53582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-153691IPR001471AP2/ERF domain
PROSITE profilePS5103215.7383691IPR001471AP2/ERF domain
SMARTSM003801.0E-113691IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAATNFTKEM SDSSSSSYLI QNSKRPKMDP NSSSSKFKGV VLQQNGHWGA QIYANHQRIW  60
LGTFKSEVES AMAYDSASIK LRSGDSHRNF P
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276492.15e-37PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6889e-27RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2R6PWH73e-36A0A2R6PWH7_ACTCH; AP2/ERF and B3 domain-containing transcription factor
STRINGVIT_11s0037g00010.t012e-36(Vitis vinifera)