PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22395_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 217aa MW: 23746.1 Da PI: 8.8586

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22395_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.1	3.7e-33	75	132	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ cra_locus_22395_iso_1_len_688_ver_3 75 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSEDPTIVITTYEGQHCHH 132 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-34	59	133	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-28	66	132	IPR003657	WRKY domain
PROSITE profile	PS50811	29.643	69	134	IPR003657	WRKY domain
SMART	SM00774	1.5E-38	74	133	IPR003657	WRKY domain
Pfam	PF03106	7.5E-26	75	132	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
XGGGGGCGGE MDAEQQPVAS SSSSEDQPEK STASGGSASK PTTTETASKV KKKGQKRIRQ 60 PRFAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC TNTKCTVKKR VERSSEDPTI 120 VITTYEGQHC HHTVGFPRSG LINHEAAAFA SPLTTPSNPS QFYYTGVPFP QESLLTRESF 180 QYSREGGDTR ILPEPTAPQS TDEGLLGDIV PPGMRNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-26	64	131	7	74	Probable WRKY transcription factor 4
2lex_A	3e-26	64	131	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00067	PBM	Transfer from AT1G69310	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027098617.1	4e-96	probable WRKY transcription factor 57
Refseq	XP_027098618.1	4e-96	probable WRKY transcription factor 57
Refseq	XP_027098620.1	4e-96	probable WRKY transcription factor 57
Refseq	XP_027151125.1	4e-96	probable WRKY transcription factor 57
Refseq	XP_027151126.1	4e-96	probable WRKY transcription factor 57
Refseq	XP_027151127.1	4e-96	probable WRKY transcription factor 57
Swissprot	Q9C983	7e-69	WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBL	A0A068TYH9	5e-95	A0A068TYH9_COFCA; Uncharacterized protein
STRING	XP_009610330.1	8e-88	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jiang Y,Qiu Y,Hu Y,Yu D Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa. Front Plant Sci, 2016. 7: p. 145 [PMID:26904091] Jiang Y,Yu D The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance. Plant Physiol., 2016. 171(4): p. 2771-82 [PMID:27268959] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]