PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22395_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 329aa MW: 35324.8 Da PI: 6.1716

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22395_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.1	7.6e-33	187	244	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ cra_locus_22395_iso_2_len_1415_ver_3 187 EDGYRWRKYGQKAVKNSPFPRSYYRCTNTKCTVKKRVERSSEDPTIVITTYEGQHCHH 244 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-33	171	245	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-28	178	244	IPR003657	WRKY domain
PROSITE profile	PS50811	29.643	181	246	IPR003657	WRKY domain
SMART	SM00774	1.5E-38	186	245	IPR003657	WRKY domain
Pfam	PF03106	1.5E-25	187	244	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDPVSEFNTT VSSSGWTLPG AADAHDSVDN VYFFGSNSDR ILSEFGWNLP PPPAATHAFK 60 EPGGSCSARG GYGELDRIID SDLAGNCDKT SIVPESTTST FATTAATTSS GGYGGGGGCG 120 GEMDAEQQPV ASSSSSEDQP EKSTASGGSA SKPTTTETAS KVKKKGQKRI RQPRFAFMTK 180 SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTNTKCTVK KRVERSSEDP TIVITTYEGQ 240 HCHHTVGFPR SGLINHEAAA FASPLTTPSN PSQFYYTGVP FPQESLLTRE SFQYSREGGD 300 TRILPEPTAP QSTDEGLLGD IVPPGMRNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-25	177	243	8	74	Probable WRKY transcription factor 4
2lex_A	3e-25	177	243	8	74	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00067	PBM	Transfer from AT1G69310	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027098617.1	1e-112	probable WRKY transcription factor 57
Refseq	XP_027098618.1	1e-112	probable WRKY transcription factor 57
Refseq	XP_027098620.1	1e-112	probable WRKY transcription factor 57
Refseq	XP_027151125.1	1e-112	probable WRKY transcription factor 57
Refseq	XP_027151126.1	1e-112	probable WRKY transcription factor 57
Refseq	XP_027151127.1	1e-112	probable WRKY transcription factor 57
TrEMBL	A0A068TYH9	1e-105	A0A068TYH9_COFCA; Uncharacterized protein
STRING	Solyc05g012500.2.1	1e-97	(Solanum lycopersicum)
STRING	XP_009610330.1	7e-98	(Nicotiana tomentosiformis)