PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22691_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 232aa MW: 25784.1 Da PI: 7.1964

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22691_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	60.5	3.2e-19	2	40	21	59
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 prsYY+CtsagCpv+k+ver++ed k v++tYeg+Hnhe cra_locus_22691_iso_1_len_691_ver_3 2 PRSYYKCTSAGCPVRKHVERASEDIKSVITTYEGKHNHE 40 9*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	24.099	1	42	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-14	2	42	IPR003657	WRKY domain
Pfam	PF03106	2.7E-13	2	40	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.3E-18	2	42	IPR003657	WRKY domain
SMART	SM00774	1.2E-10	2	41	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
XPRSYYKCTS AGCPVRKHVE RASEDIKSVI TTYEGKHNHE VPTAKTNIGQ ASIGNSPPNI 60 SDPHSILTLP RNSNSSNPEI QVQDLSLHYQ MKPNDFSQPD LLGDLVSDIK LGAASSIYQM 120 KFPLMQSHHM PYSHFVMNSS GSHETHXISA PVMPEFPMAV PMSIRRSTNV AVGSSFNSNN 180 HSRINSLVHS SAGNQRMKES DFMFFKPKEE QKDDHVYETC LTTPDNANPT SX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-16	2	42	37	77	Probable WRKY transcription factor 4
2lex_A	1e-16	2	42	37	77	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087611.1	2e-73	WRKY transcription factor SUSIBA2-like
TrEMBL	A0A068U7U3	2e-74	A0A068U7U3_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5767	22	37