PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_22694_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 477aa MW: 53500.7 Da PI: 6.3863

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_22694_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.5e-10	306	349	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR+ri++++++Lr l+P+ + K++ +i A+eYI++Lq cra_locus_22694_iso_2_len_1725_ver_3 306 ITERNRRSRIKNGLFTLRALVPNiS------KMDMTAIIGDAIEYIQELQ 349 68*******************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.2E-15	22	158	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	1.13E-10	297	353	No hit	No description
SuperFamily	SSF47459	4.06E-14	299	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.903	299	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-10	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.6E-8	306	349	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-13	306	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MAAFEGAAVE CFRPLLVNNN NKAAWDFCIV WKLGDDPSRF IEWRGCCCSG ANISRYINVK 60 EENGQELLPR CRDAHLQHPL RTEACKLLAK FPSSNPLYSG IHGEVVISKQ PRWINNASSS 120 ILDEPFGTQV LIPVLGGLIE LFSRKQVPKD QQILDFIMAQ YISSSVEQEA RAALSFKKSN 180 SKVEEPLYCP IFDDWPRKFP ATIRDPSLKF PLTLSKSNSY PSIEGSSTGS SLPTDLGSSH 240 PSCNTSPEKS SGRYPLKRSQ TLDSKTRIEA SFSSPSVIAN QPAENEDGLK ARQRAQKESY 300 QSKNLITERN RRSRIKNGLF TLRALVPNIS KMDMTAIIGD AIEYIQELQK NVKMYEDELK 360 DMEEEDCSGY NAEQNVPNSC WEHEVSDNQP ATEFTDNPSN LMADDLRQQM IKLEVNQIGA 420 KDILLRIIYK ERQGGFLRLM QAMDALGLQV VDVNVITSNG SVLNNLRVEA KGKEIKP

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MAAFEGAAVE CFRPLLVNNN NKAAWDFCIV WKLGDDPSRF IEWRGCCCSG ANISRYINVK  60
EENGQELLPR CRDAHLQHPL RTEACKLLAK FPSSNPLYSG IHGEVVISKQ PRWINNASSS  120
ILDEPFGTQV LIPVLGGLIE LFSRKQVPKD QQILDFIMAQ YISSSVEQEA RAALSFKKSN  180
SKVEEPLYCP IFDDWPRKFP ATIRDPSLKF PLTLSKSNSY PSIEGSSTGS SLPTDLGSSH  240
PSCNTSPEKS SGRYPLKRSQ TLDSKTRIEA SFSSPSVIAN QPAENEDGLK ARQRAQKESY  300
QSKNLITERN RRSRIKNGLF TLRALVPNIS KMDMTAIIGD AIEYIQELQK NVKMYEDELK  360
DMEEEDCSGY NAEQNVPNSC WEHEVSDNQP ATEFTDNPSN LMADDLRQQM IKLEVNQIGA  420
KDILLRIIYK ERQGGFLRLM QAMDALGLQV VDVNVITSNG SVLNNLRVEA KGKEIKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027092511.1	1e-156	transcription factor bHLH90-like
TrEMBL	A0A068U634	1e-152	A0A068U634_COFCA; Uncharacterized protein