PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2271_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 157aa    MW: 17441.1 Da    PI: 10.2195
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2271_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.46.5e-09125142118
                                         ---SS-EEEEEEE--TT- CS
                                WRKY   1 ldDgynWrKYGqKevkgs 18 
                                         ldDgy+WrKYGqK+vk++
  cra_locus_2271_iso_1_len_827_ver_3 125 LDDGYKWRKYGQKVVKKA 142
                                         59**************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-10110143IPR003657WRKY domain
SuperFamilySSF1182901.2E-7117143IPR003657WRKY domain
PROSITE profilePS5081110.866120140IPR003657WRKY domain
PfamPF031062.3E-5126143IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
NQVLSFLAPS SSQNPAETTT TATAANNNGS LGFNNHSHEL LNTTRPTTTS WNTTTQHQVG  60
GGMDPKGVSN SDQNCSTGNG NEHTNSSWWR SSNTSDRSNN NKVKVRRKLR EPRFCFQTRS  120
DVDVLDDGYK WRKYGQKVVK KASIQEVIID VRIITVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109KVRRKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113402.16e-39probable WRKY transcription factor 12
SwissprotQ93WY47e-28WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A068UP643e-37A0A068UP64_COFCA; Uncharacterized protein
STRINGPOPTR_0014s04890.12e-35(Populus trichocarpa)
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]