PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2271_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 196aa MW: 22013.9 Da PI: 8.1894

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2271_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	33.2	1e-10	175	196	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk+s +pr cra_locus_2271_iso_2_len_1146_ver_3 175 LDDGYKWRKYGQKVVKNSLHPR 196 59*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-12	160	196	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-9	167	196	IPR003657	WRKY domain
PROSITE profile	PS50811	13.46	170	196	IPR003657	WRKY domain
Pfam	PF03106	6.6E-7	176	196	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MEGEIRCGGL TPNYHELQTA ASFSNSPHHH HTAINEMGFV LHEFEDHHHH HQVLSFLAPS 60 SSQNPAETTT TATAANNNGS LGFNNHSHEL LNTTRPTTTS WNTTTQHQVG GGMDPKGVSN 120 SDQNCSTGNG NEHTNSSWWR SSNTSDRSNN NKVKVRRKLR EPRFCFQTRS DVDVLDDGYK 180 WRKYGQKVVK NSLHPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	KVRRKLR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027113402.1	3e-52	probable WRKY transcription factor 12
TrEMBL	A0A068UP64	1e-50	A0A068UP64_COFCA; Uncharacterized protein
STRING	XP_010086778.1	1e-45	(Morus notabilis)