PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_2271_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

WRKY

Protein Properties

Length: 207aa MW: 23187.4 Da PI: 7.8208

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_2271_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	26.9	9.5e-09	175	192	1	18
---SS-EEEEEEE--TT- CS WRKY 1 ldDgynWrKYGqKevkgs 18 ldDgy+WrKYGqK+vk++ cra_locus_2271_iso_3_len_1453_ver_3 175 LDDGYKWRKYGQKVVKKA 192 59**************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.7E-10	160	193	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-7	167	193	IPR003657	WRKY domain
PROSITE profile	PS50811	10.866	170	190	IPR003657	WRKY domain
Pfam	PF03106	3.3E-5	176	193	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEGEIRCGGL TPNYHELQTA ASFSNSPHHH HTAINEMGFV LHEFEDHHHH HQVLSFLAPS 60 SSQNPAETTT TATAANNNGS LGFNNHSHEL LNTTRPTTTS WNTTTQHQVG GGMDPKGVSN 120 SDQNCSTGNG NEHTNSSWWR SSNTSDRSNN NKVKVRRKLR EPRFCFQTRS DVDVLDDGYK 180 WRKYGQKVVK KASIQEVIID VRIITVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	KVRRKLR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027113402.1	1e-47	probable WRKY transcription factor 12
TrEMBL	A0A068UP64	6e-46	A0A068UP64_COFCA; Uncharacterized protein
STRING	XP_010086778.1	1e-40	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7336	20	29