PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2272_iso_8
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25100.8 Da    PI: 9.9832
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2272_iso_8genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.51.3e-312675150
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  cra_locus_2272_iso_8_len_1118_ver_3 26 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 75
                                         79***********************************************8 PP
2K-box63.67.6e-2294153463
                                K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslk 63 
                                          s+  s++ea+a+ +qqe++kL+++i+nLq++++++lGe+L+sL++++L++Le+++e++++
  cra_locus_2272_iso_8_len_1118_ver_3  94 SHAGSVAEANAQFYQQEASKLRAQISNLQNSNKNMLGESLGSLTMRDLKNLESRVERGIS 153
                                          4445599***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-411877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6691878IPR002100Transcription factor, MADS-box
CDDcd002651.82E-451992No hitNo description
SuperFamilySSF554553.14E-331990IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002074IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-332040IPR002100Transcription factor, MADS-box
PfamPF003197.6E-272774IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-334055IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-335576IPR002100Transcription factor, MADS-box
PfamPF014861.1E-13102153IPR002487Transcription factor, K-box
PROSITE profilePS512978.703104213IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006563Biological ProcessL-serine metabolic process
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0009416Biological Processresponse to light stimulus
GO:0009853Biological Processphotorespiration
GO:0019464Biological Processglycine decarboxylation via glycine cleavage system
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0005886Cellular Componentplasma membrane
GO:0009534Cellular Componentchloroplast thylakoid
GO:0009570Cellular Componentchloroplast stroma
GO:0010319Cellular Componentstromule
GO:0022626Cellular Componentcytosolic ribosome
GO:0048046Cellular Componentapoplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004372Molecular Functionglycine hydroxymethyltransferase activity
GO:0008266Molecular Functionpoly(U) RNA binding
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MANYQSDQSR EMSPLRRLGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV  60
ALIVFSSRGR LYEYANNSVK ATIERYKKAN SDTSHAGSVA EANAQFYQQE ASKLRAQISN  120
LQNSNKNMLG ESLGSLTMRD LKNLESRVER GISXDPIKEX XXXXXXXXXX XXXXXXXXXX  180
XXXXYDAARN FLQVNGLQSN DHYSRHHDQP PPPPPPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-211890173MEF2C
5f28_B2e-211890173MEF2C
5f28_C2e-211890173MEF2C
5f28_D2e-211890173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011102153.12e-95floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_011102155.12e-95floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ408859e-92AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A097CK551e-90A0A097CK55_SESIN; AGAMOUS
STRINGMigut.M00986.1.p3e-87(Erythranthe guttata)
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]