PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22849_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ZF-HD
Protein Properties Length: 275aa    MW: 30215.1 Da    PI: 9.9479
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22849_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.61.4e-333996359
                           ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                                           v+Y+eClkNhAa+lGgha+DGCgEfm+s++++ +++a+lkCaACgCHRnFHRre ++
  cra_locus_22849_iso_2_len_1013_ver_3 39 VVVYRECLKNHAANLGGHALDGCGEFMASPNANpSDPASLKCAACGCHRNFHRREIDD 96
                                          689******************************9*********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-234096IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-284094IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-304294IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.8564293IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.1E-28147215IPR009057Homeodomain-like
SuperFamilySSF466891.08E-18149214IPR009057Homeodomain-like
TIGRFAMsTIGR015656.3E-25156213IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
XGRGTLKKFH YPYHHHRHGH HHHRQFGAGG GTNPVAAAVV VYRECLKNHA ANLGGHALDG  60
CGEFMASPNA NPSDPASLKC AACGCHRNFH RREIDDHRFS NSQHFLDFRR PSSPPSQMLL  120
ALSNAAQETQ QQQNHHQVAT PVTPTAAKTE NHLSGRKRFR TKFSQEQKER MFSFSEKLGW  180
KMQKSDDSMI REFCNEIGVG KGVLKVWMHN NKNKKDIVIV GGGNGGNING GGDRDNNNNN  240
NVNDNNNGSS HDQNNAAVHL QASTTTAGSI SSPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-211572131874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027099598.11e-87zinc-finger homeodomain protein 9-like
SwissprotQ9LXG09e-57ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2J6JVB02e-71A0A2J6JVB0_LACSA; Uncharacterized protein
TrEMBLA0A2U1LEG95e-72A0A2U1LEG9_ARTAN; Uncharacterized protein
STRINGSolyc05g007580.1.17e-72(Solanum lycopersicum)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]