PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_228_iso_10

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GeBP

Protein Properties

Length: 402aa MW: 44098.1 Da PI: 6.2497

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_228_iso_10	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	124.6	4.6e-39	179	276	1	98
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaks 74 klfqrlwse+Dei++LqG+id++ak++++p++d++af ef+kks++++vs++ql +KirrLKkK++++ +k k+ cra_locus_228_iso_10_len_1762_ver_3 179 KLFQRLWSEDDEIAILQGMIDYQAKKKADPVADLNAFLEFIKKSLHIDVSRTQLQDKIRRLKKKYENNASKGKK 252 579********************************************************************* PP DUF573 75 gkepsfskehdqkifelskkiWgs 98 gke++fsk+h+q ++elskkiWg+ cra_locus_228_iso_10_len_1762_ver_3 253 GKEKVFSKAHEQMSYELSKKIWGQ 276 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.4E-34	181	275	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MAKSRDAVPY PPVESSDDSG EEEDSSSEEE SDSSESEPEP PGTQDSQAAK KPTPAAVKKP 60 EQQPSKTQPA DSSSDDDESD TDSDTLPTKX PNPNIKPIAS KPMDEVQKSP TTRKPRSKSN 120 ASGPTSPTKP TPSPGAKRPS GAVGVSDGET KDAKRSKKKS ETGVETVEKT VNSNDDSKKL 180 FQRLWSEDDE IAILQGMIDY QAKKKADPVA DLNAFLEFIK KSLHIDVSRT QLQDKIRRLK 240 KKYENNASKG KKGKEKVFSK AHEQMSYELS KKIWGQGNSA EESVLESPKV NGTAVRKSRT 300 KNAPVLAPKL DEPEEAVKED KILGGEKSVE GLKGVHIGLG SQGIEGWIAK KGMEVIKGEK 360 REEMEEKWKK LNVEEIEIYA KKLELMLEQT KSVLEALKSS VH

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MAKSRDAVPY PPVESSDDSG EEEDSSSEEE SDSSESEPEP PGTQDSQAAK KPTPAAVKKP  60
EQQPSKTQPA DSSSDDDESD TDSDTLPTKX PNPNIKPIAS KPMDEVQKSP TTRKPRSKSN  120
ASGPTSPTKP TPSPGAKRPS GAVGVSDGET KDAKRSKKKS ETGVETVEKT VNSNDDSKKL  180
FQRLWSEDDE IAILQGMIDY QAKKKADPVA DLNAFLEFIK KSLHIDVSRT QLQDKIRRLK  240
KKYENNASKG KKGKEKVFSK AHEQMSYELS KKIWGQGNSA EESVLESPKV NGTAVRKSRT  300
KNAPVLAPKL DEPEEAVKED KILGGEKSVE GLKGVHIGLG SQGIEGWIAK KGMEVIKGEK  360
REEMEEKWKK LNVEEIEIYA KKLELMLEQT KSVLEALKSS VH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027078379.1	1e-121	probable transcription factor At4g00390