PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22971_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 117aa    MW: 12893.9 Da    PI: 10.1725
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22971_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000225072123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C+ C+k F++   L  H  +H
  cra_locus_22971_iso_1_len_370_ver_3 50 FSCKTCNKKFPTFQALGGHRASH 72
                                         89**********99999998887 PP
2zf-C2H211.40.00196117122
                                          EEETTTTEEESSHHHHHHHHHH CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                                          ++C++Cg  Fs    L  H+r+
  cra_locus_22971_iso_1_len_370_ver_3  96 HQCSICGLKFSLGQALGGHMRR 117
                                          79**********9999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-848116No hitNo description
PfamPF139121.4E-114974IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5155077IPR007087Zinc finger, C2H2
SMARTSM003550.135072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139128.3E-795116IPR007087Zinc finger, C2H2
SMARTSM003555696116IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MTVLKRSRED HDREAIESLA MANCLMLLST VGKTTNNSSP LIGSDNDRVF SCKTCNKKFP  60
TFQALGGHRA SHKKIKLLNS DLIIHNSADD VKPKTHQCSI CGLKFSLGQA LGGHMRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094278.17e-44zinc finger protein ZAT12-like
SwissprotQ424102e-28ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLB2CZY82e-42B2CZY8_CAMSI; Putative cold-inducible protein
STRINGVIT_06s0004g04180.t017e-40(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  3. Munekage YN,Inoue S,Yoneda Y,Yokota A
    Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(6): p. 1116-26
    [PMID:25293694]
  4. Le CT, et al.
    ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses.
    Plant Physiol., 2016. 170(1): p. 540-57
    [PMID:26556796]
  5. Ben Daniel BH, et al.
    Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens.
    Physiol Plant, 2016. 157(4): p. 422-41
    [PMID:26923089]
  6. Tang Y, et al.
    Oxidative stress-induced toxicity of CuO nanoparticles and related toxicogenomic responses in Arabidopsis thaliana.
    Environ. Pollut., 2016. 212: p. 605-614
    [PMID:27016889]
  7. Corrales AR, et al.
    Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
    Plant Cell Environ., 2017. 40(5): p. 748-764
    [PMID:28044345]
  8. Xu J,Tran T,Padilla Marcia CS,Braun DM,Goggin FL
    Superoxide-responsive gene expression in Arabidopsis thaliana and Zea mays.
    Plant Physiol. Biochem., 2017. 117: p. 51-60
    [PMID:28587993]
  9. Nguyen HM, et al.
    Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
    Front Plant Sci, 2017. 8: p. 1001
    [PMID:28717360]