PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_23016_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 191aa MW: 20993.9 Da PI: 10.2306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_23016_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.7e-06	3	31	22	55
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 L++l+P+a K +Ka++L +++ Y+k+Lq cra_locus_23016_iso_4_len_629_ver_3 3 ALQKLVPNA-----SKTDKASMLDEVIVYLKQLQ 31 799***9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.99E-7	1	35	No hit	No description
PROSITE profile	PS50888	11.325	1	30	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-9	1	43	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-9	2	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MKALQKLVPN ASKTDKASML DEVIVYLKQL QNEVQMMSRN MALPQMMMMM NPLAMQQQLQ 60 MSLLARMGMG MGVGLGMGMG MLDSNTLVRS TTSPISSGLI STTPMPSSFL PSHFAMPTAP 120 HPSQPKSSAT NPAPPPFADP YTSFLAQQAM NMDIYKMAAL YRQHQQANQA TQATSNSSQP 180 NFIQREXHKN X

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015571977.1	8e-49	transcription factor PIF7 isoform X1
Refseq	XP_015571978.1	5e-49	transcription factor PIF7 isoform X2
TrEMBL	A0A068V9P2	6e-41	A0A068V9P2_COFCA; Uncharacterized protein
TrEMBL	A0A2G9GYD1	5e-41	A0A2G9GYD1_9LAMI; Uncharacterized protein
STRING	EOY21971	2e-37	(Theobroma cacao)