PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_23063_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HD-ZIP

Protein Properties

Length: 181aa MW: 20985.7 Da PI: 9.8608

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_23063_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	6e-19	12	66	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++++eq++ Le+ F+ n++++ +++ +LA++lgLt r+V +W+qN+Ra++k+ cra_locus_23063_iso_1_len_688_ver_3 12 HKKRLSEEQIRLLETSFNLNNKLDPDRKSQLAQELGLTPRKVAIWYQNKRARWKN 66 56779************************************************95 PP
2	HD-ZIP_I/II	106.5	2e-34	12	103	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 +k+rls+eq++lLE+sF+ ++kL+p+rK++la+eLgl+pr+va+W+qn+RAR+k++ lE+++++L+ +++ l+e cra_locus_23063_iso_1_len_688_ver_3 12 HKKRLSEEQIRLLETSFNLNNKLDPDRKSQLAQELGLTPRKVAIWYQNKRARWKNQSLEVNHKSLQVRLEGLVE 85 69********************************************************************** PP HD-ZIP_I/II 76 enerLekeveeLreelke 93 +ne+L+ eve+L++el++ cra_locus_23063_iso_1_len_688_ver_3 86 DNEKLRIEVERLKQELQK 103 *************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.649	7	67	IPR001356	Homeobox domain
SMART	SM00389	9.6E-17	9	71	IPR001356	Homeobox domain
CDD	cd00086	1.02E-14	10	68	No hit	No description
SuperFamily	SSF46689	9.19E-18	11	72	IPR009057	Homeodomain-like
Pfam	PF00046	3.4E-16	12	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-19	14	71	IPR009057	Homeodomain-like
PRINTS	PR00031	6.7E-6	38	47	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	42	65	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.7E-6	47	63	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
SHARKQQHLK YHKKRLSEEQ IRLLETSFNL NNKLDPDRKS QLAQELGLTP RKVAIWYQNK 60 RARWKNQSLE VNHKSLQVRL EGLVEDNEKL RIEVERLKQE LQKAQEILLS INSYNYNYNT 120 TYSNSISSSC DEVGSSISLL RGGSKNDGAG LDKEDLFACL IGTTNWRSRF LSASIYFLII 180 N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	14	RKQQHLKYHKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800499.1	2e-61	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A1U7YMN8	5e-60	A0A1U7YMN8_NICSY; homeobox-leucine zipper protein ATHB-52-like
STRING	XP_009800499.1	9e-61	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53