PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_23250_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 356aa MW: 39840.8 Da PI: 7.7882

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_23250_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.7	2.8e-50	15	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee......v.ikevdiykvePwdLpkkvkaeekewyfF 61 lppGfrFhP+deel+++yL kkv g + v + evd++k+ePw++p+++ + kewyf+ cra_locus_23250_iso_2_len_1153_ver_3 15 LPPGFRFHPRDEELICDYLMKKVVGGGggcdeD---QvqrypgVrMVEVDLNKSEPWEIPESACVGGKEWYFY 84 79*******************9999674441...2566777559**********7777799** PP NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 s+rd+ky++g r+nrat++gyWkatgkd++v++ k +lvg++ktLvfy+grapkg+ktdWvmhe+rl cra_locus_23250_iso_2_len_1153_ver_3 85 SQRDRKYSSGLRTNRATATGYWKATGKDRAVFR-KAKLVGMRKTLVFYQGRAPKGRKTDWVMHEFRL 150 *****************************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-57	7	180	IPR003441	NAC domain
PROSITE profile	PS51005	54.813	15	179	IPR003441	NAC domain
Pfam	PF02365	1.6E-26	16	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MSSNNNILSM VEAKLPPGFR FHPRDEELIC DYLMKKVVGG GGGCDEDQVQ RYPGVRMVEV 60 DLNKSEPWEI PESACVGGKE WYFYSQRDRK YSSGLRTNRA TATGYWKATG KDRAVFRKAK 120 LVGMRKTLVF YQGRAPKGRK TDWVMHEFRL QGSSLSSSSS SIHRIIKEED WVLCRVFFKN 180 REILPKQQLV NGAVVHGGDH HDIICSSLPP LMDPYINFTQ THNNNNNNNN NETNEQVPCF 240 SIFTPADQIS ISSSSSSSCQ PFSYLMASNT STYDPNLISN IMVPNFGGNL PEEFGGNKTV 300 VVRAVLNELT KMEQNNNNLN NPLITAVKSS PSFGEAAASS DSYLSEAALS TMWNQY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MSSNNNILSM VEAKLPPGFR FHPRDEELIC DYLMKKVVGG GGGCDEDQVQ RYPGVRMVEV  60
DLNKSEPWEI PESACVGGKE WYFYSQRDRK YSSGLRTNRA TATGYWKATG KDRAVFRKAK  120
LVGMRKTLVF YQGRAPKGRK TDWVMHEFRL QGSSLSSSSS SIHRIIKEED WVLCRVFFKN  180
REILPKQQLV NGAVVHGGDH HDIICSSLPP LMDPYINFTQ THNNNNNNNN NETNEQVPCF  240
SIFTPADQIS ISSSSSSSCQ PFSYLMASNT STYDPNLISN IMVPNFGGNL PEEFGGNKTV  300
VVRAVLNELT KMEQNNNNLN NPLITAVKSS PSFGEAAASS DSYLSEAALS TMWNQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-51	11	182	11	171	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027062379.1	1e-123	NAC domain-containing protein 21/22-like isoform X1
TrEMBL	A0A068UYJ9	1e-118	A0A068UYJ9_COFCA; Uncharacterized protein
STRING	XP_009605813.1	1e-117	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297