PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_23496_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 233aa MW: 27247.7 Da PI: 9.4398

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_23496_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.8	8e-44	42	175	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkky 68 +pGfrF Pt+eelv++yL+kk+e++ + l++vi+ ++iy++ePw Lpk +++++++w+fF++r++++ cra_locus_23496_iso_1_len_726_ver_3 42 QPGFRFYPTEEELVSFYLRKKLEENIrepNLLDRVIPVIHIYEFEPWLLPKlsgeLCSGDSEQWFFFVPRQERE 115 69******************9987664444567***********656653444677******** PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 a+g r+nr+t+sgyWkatg+ + v+s++++++g+kk++vfy+g+ap+g+kt+W m+eyr+ cra_locus_23496_iso_1_len_726_ver_3 116 ARGGRPNRTTASGYWKATGSPNYVYSSNNRVIGVKKSMVFYRGKAPTGKKTTWKMNEYRA 175 ********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-48	38	203	IPR003441	NAC domain
PROSITE profile	PS51005	47.684	41	205	IPR003441	NAC domain
Pfam	PF02365	7.8E-25	43	174	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
XAGGLKAREN NIHTNQFAYI DFMDMQQQED QKQKEIKLVE FQPGFRFYPT EEELVSFYLR 60 KKLEENIREP NLLDRVIPVI HIYEFEPWLL PKLSGELCSG DSEQWFFFVP RQEREARGGR 120 PNRTTASGYW KATGSPNYVY SSNNRVIGVK KSMVFYRGKA PTGKKTTWKM NEYRAIEEQI 180 LPSSSSAQPI PKLRHELSLC RVYIISGSCR AFDRRPLWTE TRRLGEIAQD FSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-35	31	203	7	163	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-35	31	203	7	163	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-35	31	203	7	163	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-35	31	203	7	163	NO APICAL MERISTEM PROTEIN
3swm_A	8e-35	31	203	10	166	NAC domain-containing protein 19
3swm_B	8e-35	31	203	10	166	NAC domain-containing protein 19
3swm_C	8e-35	31	203	10	166	NAC domain-containing protein 19
3swm_D	8e-35	31	203	10	166	NAC domain-containing protein 19
3swp_A	8e-35	31	203	10	166	NAC domain-containing protein 19
3swp_B	8e-35	31	203	10	166	NAC domain-containing protein 19
3swp_C	8e-35	31	203	10	166	NAC domain-containing protein 19
3swp_D	8e-35	31	203	10	166	NAC domain-containing protein 19
4dul_A	8e-35	31	203	7	163	NAC domain-containing protein 19
4dul_B	8e-35	31	203	7	163	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083422.1	2e-97	NAC domain-containing protein 90-like
Refseq	XP_027184824.1	2e-97	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	9e-81	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A068UEA7	6e-94	A0A068UEA7_COFCA; Uncharacterized protein
TrEMBL	A0A1U7VCH0	5e-94	A0A1U7VCH0_NICSY; NAC domain-containing protein 90
TrEMBL	Q9SXQ0	5e-94	Q9SXQ0_TOBAC; NAC domain-containing protein 90
STRING	XP_009759500.1	9e-95	(Nicotiana sylvestris)
STRING	PGSC0003DMT400067707	2e-94	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]