PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_23742_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family WRKY
Protein Properties Length: 359aa    MW: 38500.3 Da    PI: 4.4809
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_23742_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.8e-30139196359
                                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                           D ++WrKYGqK++kgs++pr+YYrC+++ gC+++k+ver+ +dp+++++ Y+geH+h+
  cra_locus_23742_iso_1_len_1196_ver_3 139 DSWAWRKYGQKPIKGSPYPRNYYRCSTSkGCSARKQVERCPTDPNIFVVSYSGEHTHP 196
                                           99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-31123198IPR003657WRKY domain
SuperFamilySSF1182908.89E-27130198IPR003657WRKY domain
PROSITE profilePS5081132.569132198IPR003657WRKY domain
SMARTSM007744.0E-35137197IPR003657WRKY domain
PfamPF031061.7E-25139196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
XAAASSSSSC SINPVAVNDF HVPEVIDLDD KDIIDESFQG LEEIYKELFS PNFSGSVPGE  60
FQLDQRKIQA PPDHEQQVQP AAAGDQLVVQ GQNQHLHIRH GIVCSSSPPQ PAAAGRPRRR  120
KNQQTKTVHQ MTQEELSGDS WAWRKYGQKP IKGSPYPRNY YRCSTSKGCS ARKQVERCPT  180
DPNIFVVSYS GEHTHPRPTH RSSLAGSTRS KLSPSAKQTS TSAATTSINT AAQITSSPPA  240
PATISPTTPI IGGESEGEEN IENDNAEISG NVIEEEEEEE EDQEGNDDEE DILIPNNFIT  300
DDILKGFQEL TGGGGATNNN GSDSSGTFAD KSSCSLLSPP WTPTSSTAGG GCXLAEPNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-201381991780Disease resistance protein RRS1
5w3x_D5e-201381991780Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122GRPRRRKNQ
2116120PRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G9HFK94e-80A0A2G9HFK9_9LAMI; Uncharacterized protein
STRINGEOY203082e-61(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138601014