PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_23780_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 246aa    MW: 28287 Da    PI: 8.6057
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_23780_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34231142102
                                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT CS
                          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks 74 
                                           Fl k+y ++ed++ +e+isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+ +++     
  cra_locus_23780_iso_1_len_1203_ver_3  23 FLLKTYMLVEDPASDEVISWNDDGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKIATSR----- 90 
                                           9****************************************************************999..... PP

                                           XTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                          HSF_DNA-bind  75 kekiweFkhksFkkgkkellekikrkks 102
                                               weF+++ F+kg k++l++i+r+k 
  cra_locus_23780_iso_1_len_1203_ver_3  91 ----WEFSNEMFRKGAKDQLCEIRRRKA 114
                                           ....*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.6E-3616107IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.53E-3318112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-5319112IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDNCEISERS LLEYVRKSSP PPFLLKTYML VEDPASDEVI SWNDDGTAFV VWQPAEFARD  60
LLPTLFKHSN FSSFVRQLNT YGFRKIATSR WEFSNEMFRK GAKDQLCEIR RRKAWNNNNK  120
SQTKKDQSKL AAAIAAELPL KEAEEDQRSS STSSSSDEYS ILVHENKRLK KENGFLSSEL  180
STMKNKCKEL LELVAAHSSS EKEGNNLEGK PKLFGVRLEV EAEIERKRKM AEIRQNATLF  240
LFQSCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B4e-22231124104Putative transcription factor
5d5x_B4e-22231124104Putative transcription factor
5d5x_E4e-22231124104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066484.11e-111heat stress transcription factor B-3-like
RefseqXP_027066561.11e-111heat stress transcription factor B-3-like
SwissprotO222309e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A068V0E21e-109A0A068V0E2_COFCA; Uncharacterized protein
STRINGXP_008244246.11e-108(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241