PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2379_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family BES1
Protein Properties Length: 253aa    MW: 26253.5 Da    PI: 4.7224
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2379_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82230.11.6e-0927374148
                               DUF822  74 kpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa.....asllpvlsv 142
                                          kp e++++ag s+s+sp+ss+q        +sp++sy++sp+sssfpsp+s++ + ++ +     +sl+p+l++
  cra_locus_2379_iso_3_len_1131_ver_3   2 KPAERMDMAGPSTSVSPCSSYQ--------PSPIASYNPSPSSSSFPSPVSSQYAAANVNntadaNSLIPWLKN 67 
                                          7889******************........*******************99887655544567779******** PP

                               DUF822 143 lslvss 148
                                          ls+ ss
  cra_locus_2379_iso_3_len_1131_ver_3  68 LSSGSS 73 
                                          998544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-11269IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
XKPAERMDMA GPSTSVSPCS SYQPSPIASY NPSPSSSSFP SPVSSQYAAA NVNNTADANS  60
LIPWLKNLSS GSSPASSKLH HNLYIPSGSI SAPVTPPLSS PTARTPRMQD GWNDNAGSAW  120
ASPQFAFLPS STPSSPGRLT PPDSGWLSGV QTPNDGPSSP TFSLVASNPF GTKEPFSNGG  180
SRMWTPGQSG TCSPAIAAGF DQTADVPMTD AVSAEFAFGS NTKGLVKPWE GERIHEECVS  240
DDLELTLGNP STR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027111979.11e-128BES1/BZR1 homolog protein 4-like isoform X1
RefseqXP_027111980.11e-128BES1/BZR1 homolog protein 4-like isoform X2
RefseqXP_027161672.11e-128BES1/BZR1 homolog protein 4-like isoform X1
RefseqXP_027161674.11e-128BES1/BZR1 homolog protein 4-like isoform X2
SwissprotQ9ZV883e-89BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A2G9HVA01e-126A0A2G9HVA0_9LAMI; Uncharacterized protein
STRINGXP_009607196.11e-116(Nicotiana tomentosiformis)