PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_24064_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 327aa MW: 37372.4 Da PI: 9.0288

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_24064_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.3	1.4e-18	170	259	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k +++s+v + +l lp++f+e+h +++++++lede+g ++e +i ++++ l++GW+ F+ +++ cra_locus_24064_iso_1_len_1133_ver_3 170 FVKSMVRSHVYSCFWLGLPNRFCEDHLP--KSTVDMILEDEEGAEYEAVFISKRTG----LSGGWRAFALDHK 236 89**********************53..3789************544444....********* PP --TT-EEEEEE-SSSEE..EEEEE- CS B3 74 LkegDfvvFkldgrsefelvvkvfr 98 L++gD +vF+l++ ++f +v ++r cra_locus_24064_iso_1_len_1133_ver_3 237 LDDGDALVFELVEPTRF--KVYIVR 259 ********9876666..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-22	163	260	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-24	164	261	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.99E-27	168	259	No hit	No description
Pfam	PF02362	5.5E-17	170	259	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.338	170	261	IPR003340	B3 DNA binding domain
SMART	SM01019	3.9E-25	170	261	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
XPYERSSPCA TASPSPAELK RCSQVNNFVQ MEKDSKINSY EEARKQRVLD NKKRFEDLGI 60 LSISKSLSDI SKSEKKSEQR QRQIRPKREN VYSLEPRRSS RARNPVPSYR DDVDVDLPRM 120 RKRSKWDSSW ASYLARPVEE VRSASFQERA DALKSAEKLQ TNLQSENPSF VKSMVRSHVY 180 SCFWLGLPNR FCEDHLPKST VDMILEDEEG AEYEAVFISK RTGLSGGWRA FALDHKLDDG 240 DALVFELVEP TRFKVYIVRA AYSSTKENHE ASFEEGNDAE EEEEGAPEKK AAKSRKKSNQ 300 AKDTTFVSTK DNSSEGTTVL RRSSRGK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019178750.1	1e-143	PREDICTED: putative B3 domain-containing protein At5g58280 isoform X2
Swissprot	Q9FHB2	2e-71	Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBL	M1BUK6	1e-131	M1BUK6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400053199	1e-132	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12510	20	22

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]