PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_24253_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 283aa    MW: 31504.2 Da    PI: 5.6488
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_24253_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.1e-05142164123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          ++C++C k F+++  L +H   H
  cra_locus_24253_iso_3_len_939_ver_3 142 FQCEICRKIFTSSQALGSHKTIH 164
                                          89*****************9887 PP
2zf-C2H212.90.00032183205123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          ++Cp Cgk+F +   L  H r+H
  cra_locus_24253_iso_3_len_939_ver_3 183 HECPFCGKVFGSGQALGGHKRSH 205
                                          79**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.4E-4140165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.35E-9140205No hitNo description
PfamPF139121.0E-4142166IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.201142164IPR007087Zinc finger, C2H2
SMARTSM003550.023142164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4180205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11182205IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221183205IPR007087Zinc finger, C2H2
SMARTSM003550.014183205IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
TSSEHFEEED DEDEAEEEAK LGVYGLRENP KKSFRLADPE FLDVSGGSVI VLQDRESETE  60
STRKPTRRRS KRTRKMFVAK IDDELELQNK KEKKMVIKPN STHESLVSSV SSDTNNSPEE  120
DLALCLIMLS RDVWSTKICR KFQCEICRKI FTSSQALGSH KTIHKKIIKN CPENNNNGDE  180
KVHECPFCGK VFGSGQALGG HKRSHFLTSS TTTTTTTTAP APAPALPPFL ASASSSSKLH  240
EGLMIDLNLP APMEENQEED EFCFQEGSAV SDANFINPIK HGQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253013.11e-66PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1J6IGJ43e-65A0A1J6IGJ4_NICAT; Zinc finger protein zat4
STRINGXP_010258927.15e-61(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480