PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_2426_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 168aa    MW: 19380.2 Da    PI: 10.0703
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_2426_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.2e-0690113226
                                         -S---SGGGGTS--TTTTT-SS-SS CS
                             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                         k  lC ff   G+C  G +CkF+H+
  cra_locus_2426_iso_7_len_827_ver_3  90 KSILCEFFKV-GQCAKGFKCKFSHD 113
                                         6779**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.71888115IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-488114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-490114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MPPKQQSKAD LAKKQKVVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD TKKIDAKKKK  60
EEEKAKEKEL NDLFKVAVSQ PKVPAGVDPK SILCEFFKVG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQEQETMEDW DQETLEKVVQ SKSNEYNKNK PTDIVSFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238516.11e-97PREDICTED: zinc finger CCCH domain-containing protein 11-like
RefseqXP_020595047.19e-99zinc finger CCCH domain-containing protein 21-like, partial
SwissprotQ9SK744e-87C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLA0A2Z7D3252e-98A0A2Z7D325_9LAMI; Zinc finger protein
STRINGGLYMA13G19900.13e-92(Glycine max)