PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_24506_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 291aa MW: 30059.3 Da PI: 10.8545

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_24506_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.6	1.1e-38	58	152	2	98
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec. 73 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ cra_locus_24506_iso_1_len_2230_ver_3 58 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSt 130 789*****************************************************************98884 PP TCP 74 .eaesssssasnsssg..kaaksaaksk 98 +a+s ++s+s+ s++ + k++ cra_locus_24506_iso_1_len_2230_ver_3 131 vSAASGRNSSSTLSAPldH------KPS 152 4444444444433333321......222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.8E-33	64	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	64	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
XIKQGGVKRG AGGGRRSRYK EHLPMSSASA DGNANGNGAI IDPSQRGNSS GNGSTALAVK 60 KPPAKDRHSK VDGRGRRIRM PIICAARVFQ LTRELGHKSD GQTIEWLLRQ AEPSIIAATG 120 TGTTPASFST VSAASGRNSS STLSAPLDHK PSSQQPLLAP TPFLLGKRLR SSNDDDNIND 180 KDDGSGTVVG STAIGGGFWA LPARPDLGQV WSFAAAAAVA QPEIVVPTLG ATQQPGAAAR 240 FLQQPTAMGE ASAARVGNYL PIAHQGHLNL LASLSGPPPP PSSDQREGDA R

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027178548.1	1e-142	transcription factor TCP7-like
Swissprot	Q9FMX2	1e-82	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A068U7Q1	1e-140	A0A068U7Q1_COFCA; Uncharacterized protein
STRING	VIT_10s0042g00170.t01	2e-99	(Vitis vinifera)