PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_24506_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

TCP

Protein Properties

Length: 334aa MW: 35157.7 Da PI: 10.7274

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_24506_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.2	1.4e-38	101	195	2	98
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec. 73 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ cra_locus_24506_iso_3_len_2360_ver_3 101 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSt 173 789*****************************************************************98884 PP TCP 74 .eaesssssasnsssg..kaaksaaksk 98 +a+s ++s+s+ s++ + k++ cra_locus_24506_iso_3_len_2360_ver_3 174 vSAASGRNSSSTLSAPldH------KPS 195 4444444444433333321......222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.4E-33	107	197	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	107	161	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
PPILLPLQNP SFTIFFCFPP PKSLPQFHQF KLYCKQKKEK EKSNIKQGGV KRGAGGGRRS 60 RYKEHLPMSS ASADGNANGN GAIIDPSQRG NSSGNGSTAL AVKKPPAKDR HSKVDGRGRR 120 IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSAASGR 180 NSSSTLSAPL DHKPSSQQPL LAPTPFLLGK RLRSSNDDDN INDKDDGSGT VVGSTAIGGG 240 FWALPARPDL GQVWSFAAAA AVAQPEIVVP TLGATQQPGA AARFLQQPTA MGEASAARVG 300 NYLPIAHQGH LNLLASLSGP PPPPSSDQRE GDAR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027178548.1	1e-141	transcription factor TCP7-like
Swissprot	Q9FMX2	1e-81	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A068U7Q1	1e-139	A0A068U7Q1_COFCA; Uncharacterized protein
STRING	VIT_10s0042g00170.t01	3e-98	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42